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We present RKappa, a framework for the development and analysis of rule-based models within a mature, statistically empowered R environment. The infrastructure allows model editing, modification, parameter sampling, simulation, statistical…

Molecular Networks · Quantitative Biology 2014-12-16 Anatoly Sorokin , Oksana Sorokina , J. Douglas Armstrong

This article describes a data center hosting a web portal for accessing and sharing the output of large, cosmological, hydro-dynamical simulations with a broad scientific community. It also allows users to receive related scientific data…

Instrumentation and Methods for Astrophysics · Physics 2018-10-22 Antonio Ragagnin , Klaus Dolag , Veronica Biffi , Marionne Cadolle Bel , Nicolay J. Hammer , Aliaksei Krukau , Margarita Petkova , Daniel Steinborn

We propose the use of beamplots - which can be produced by using the R package BibPlots and WoS downloads - as a preferred alternative to h index values for assessing single researchers.

Digital Libraries · Computer Science 2020-01-22 Robin Haunschild , Lutz Bornmann , Jonathan Adams

rollama is an R package that wraps the Ollama API, which allows you to run different Generative Large Language Models (GLLM) locally. The package and learning material focus on making it easy to use Ollama for annotating textual or imagine…

Computation and Language · Computer Science 2024-04-12 Johannes B. Gruber , Maximilian Weber

The Herschel Interactive Processing Environment (HIPE) was developed by the European Space Agency (ESA) in collaboration with NASA and the Herschel Instrument Control Centres to provide the astronomical community a complete environment to…

Graphics · Computer Science 2012-07-18 Pasquale Panuzzo , Jinjing Li , Emmanuel Caux

Histograms provide a powerful means of summarizing large data sets by representing their distribution in a compact, binned form. The HistogramTools R package enhances R built-in histogram functionality, offering advanced methods for…

Databases · Computer Science 2025-04-02 Shubham Malhotra

This paper presents SunPy (version 0.5), a community-developed Python package for solar physics. Python, a free, cross-platform, general-purpose, high-level programming language, has seen widespread adoption among the scientific community,…

Computational elements in thermodynamics have become increasingly important in contemporary chemical-engineering research and practice. However, traditional thermodynamics instruction provides little exposure to computational…

Physics Education · Physics 2025-06-26 Luc Paoli , Pavan K. Inguva , Andrew J. Haslam , Pierre J. Walker

RidePy enables fast computer simulations of on-demand mobility modes such as ridehailing or ridepooling. It strongly focuses on modeling the mobility service itself, rather than its customers or the environment. Through a combination of…

Physics and Society · Physics 2023-12-05 Felix Jung , Debsankha Manik

This paper presents the HiPart package, an open-source native python library that provides efficient and interpret-able implementations of divisive hierarchical clustering algorithms. HiPart supports interactive visualizations for the…

Machine Learning · Statistics 2023-05-02 Panagiotis Anagnostou , Sotiris Tasoulis , Vassilis Plagianakos , Dimitris Tasoulis

HEALPix -- the Hierarchical Equal Area iso-Latitude Pixelization -- is a versatile data structure with an associated library of computational algorithms and visualization software that supports fast scientific applications executable…

Astrophysics · Physics 2011-05-05 K. M. Gorski , E. Hivon , A. J. Banday , B. D. Wandelt , F. K. Hansen , M. Reinecke , M. Bartelman

We present a computational framework for "painting" galaxies on top of the Dark Matter Halo/Sub-Halo hierarchy obtained from N-body simulations. The method we use is based on the sub-halo clustering and abundance matching (SCAM) scheme…

Cosmology and Nongalactic Astrophysics · Physics 2024-02-15 Tommaso Ronconi , Andrea Lapi , Matteo Viel , Alberto Sartori

Synchrotron processes, the radiative processes associated with the interaction of energetic charged particles with magnetic field, are of interest in many areas in astronomy, from the interstellar medium to extreme environments near compact…

This paper presents the R package gRapHD for efficient selection of high-dimensional undirected graphical models. The package provides tools for selecting trees, forests and decomposable models minimizing information criteria such as AIC or…

Machine Learning · Statistics 2019-09-24 Gabriel C. G. de Abreu , Rodrigo Labouriau , David Edwards

COPASI is a popular application for simulation and analysis of biochemical networks and their dynamics. While this software is widely used, it works as a standalone application and until now it was not possible for users to interact with…

Molecular Networks · Quantitative Biology 2021-10-11 Abhishekh Gupta , Pedro Mendes

This article describes SimEngine, an open-source R package for structuring, maintaining, running, and debugging statistical simulations on both local and cluster-based computing environments. Several R packages exist for structuring…

Computation · Statistics 2025-09-25 Avi Kenny , Charles J. Wolock

DADApy is a python software package for analysing and characterising high-dimensional data manifolds. It provides methods for estimating the intrinsic dimension and the probability density, for performing density-based clustering and for…

One of the big challenges of developing interactive statistical applications is the management of the data pipeline, which controls transformations from data to plot. The user's interactions needs to be propagated through these modules and…

Graphics · Computer Science 2014-09-26 Yihui Xie , Heike Hofmann , Xiaoyue Cheng

We introduce geoplotlib, an open-source python toolbox for visualizing geographical data. geoplotlib supports the development of hardware-accelerated interactive visualizations in pure python, and provides implementations of dot maps,…

Graphics · Computer Science 2016-08-08 Andrea Cuttone , Sune Lehmann , Jakob Eg Larsen

This paper proposes a method to track human figures in physical spaces and then utilizes this data to generate several data points such as footfall distribution, demographic analysis,heat maps as well as gender distribution. The proposed…

Computer Vision and Pattern Recognition · Computer Science 2017-11-23 Namit Juneja , Rajesh Kumar Muthu