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Multi-agent systems are known to exhibit stable emergent behaviors, including polarization, over $\mathbb{R}^n$ or highly symmetric nonlinear spaces. In this article, we eschew linearity and symmetry of the underlying spaces, and study the…

Systems and Control · Electrical Eng. & Systems 2023-01-13 La Mi , Jorge Gonçalves , Johan Markdahl

Using a simple model, we study the fluctuating dynamics of inextensible, semiflexible polar filaments interacting with active and directed force generating centres such as molecular motors. Taking into account the fact that the activity…

Soft Condensed Matter · Physics 2009-11-07 Tanniemola B. Liverpool

The dynamics of an active walker in a harmonic potential is studied experimentally, numerically and theoretically. At odds with usual models of self-propelled particles, we identify two dynamical states for which the particle condensates at…

Soft Condensed Matter · Physics 2019-02-20 Olivier Dauchot , Vincent Démery

Animal cells form contractile structures to promote various functions, from cell motility to cell division. Force generation in these structures is often due to molecular motors such as myosin that require polar substrates for their…

Biological Physics · Physics 2020-11-18 Sihan Chen , Tomer Markovich , F. C. MacKintosh

The Active Brownian Particle (ABP) model exemplifies a wide class of active matter particles. In this work, we demonstrate how this model can be cast into a field theory in both two and three dimensions. Our aim is manifold: we wish both to…

Soft Condensed Matter · Physics 2022-12-26 Ziluo Zhang , Lili Fehértói-Nagy , Maria Polackova , Gunnar Pruessner

External fields can decidedly alter the free energy landscape of soft materials and can be exploited as a powerful tool for the assembly of targeted nanostructures and colloidal materials. Here, we use computer simulations to demonstrate…

Soft Condensed Matter · Physics 2019-02-08 Ahmad K. Omar , Yanze Wu , Zhen-Gang Wang , John F. Brady

This work concerns a many-body deterministic model that displays life-like properties as emergence, complexity, self-organization, spontaneous compartmentalization, and self-regulation. The model portraits the dynamics of an ensemble of…

Adaptation and Self-Organizing Systems · Physics 2023-07-11 Alessandro Scirè , Valerio Annovazzi-Lodi

Active filaments, such as microtubules with attached cargo-carrying motor proteins, are important dynamic structures for fluid transport in and around living cells. The mathematical models of active filaments appearing in the literature…

Fluid Dynamics · Physics 2025-08-19 Ilteber R. Ozdemir , Bethany Clarke , Yongyun Hwang , Eric E. Keaveny

We study an interacting high-density one-dimensional system of self-propelled particles described by the Active Ornstein-Uhlenbeck particle (AOUP) model where, even in the absence of alignment interactions, velocity and energy domains…

Statistical Mechanics · Physics 2020-10-07 Lorenzo Caprini , Umberto Marini Bettolo Marconi

We study a model of contraction-based cell motility inside a microchannel to investigate the regulation of cell polarization and motion by the mechanical resistance of the environment. A positive feedback between the asymmetry of the…

Biological Physics · Physics 2024-02-28 Tapas Singha , Pierre Sens

We computationally studied the phase behavior and dynamics of binary mixtures of active particles, where each 'species' had distinct activities leading to distinct velocities, fast and slow. We obtained phase diagrams demonstrating…

Soft Condensed Matter · Physics 2019-09-09 Thomas Kolb , Daphne Klotsa

Action potential generation underlies some of the most consequential dynamical systems on Earth, from brains to hearts. It is therefore interesting to develop synthetic cell-free systems, based on the same molecular mechanisms, which may…

Biological Physics · Physics 2024-03-07 Ziqi Pi , Giovanni Zocchi

The Cellular Automaton (CA) modeling and simulation of solid dynamics is a long-standing difficult problem. In this paper we present a new two-dimensional CA model for solid dynamics. In this model the solid body is represented by a set of…

Cellular Automata and Lattice Gases · Physics 2015-06-12 Yinfeng Dong , Guangcai Zhang , Aiguo Xu , Yanbiao Gan

We investigate the dynamical coupling between the motion and the deformation of a single self-propelled domain based on two different model systems in two dimensions. One is represented by the set of ordinary differential equations for the…

Soft Condensed Matter · Physics 2015-05-18 T. Hiraiwa , T. Ohkuma , T. Ohta , M. Y. Matsuo , M. Sano

We use Langevin dynamics simulations to study dynamical behaviour of a dense planar layer of active semi-flexible filaments. Using the strength of active force and the thermal persistence length as parameters, we map a detailed phase…

Soft Condensed Matter · Physics 2018-02-21 K. R. Prathyusha , Silke Henkes , Rastko Sknepnek

Starting from a Huxley-type model for an agitated vibrational mode, we propose an embedding of standard active particle models in terms of two-temperature processes. One temperature refers to an ambient thermal bath, and the other…

Statistical Mechanics · Physics 2024-07-02 Faezeh Khodabandehlou , Christian Maes

We study interactions between biological cells that apply anisotropic active mechanical forces on an elastic substrate. We model the cells as thin discs that along their perimeters apply radial, but angle-dependent forces on the substrate.…

Soft Condensed Matter · Physics 2019-03-28 Roman Golkov , Yair Shokef

We experimentally investigate the drag force exerted by a suspension of light-induced active particles (APs) on a translating and beating idealized flagellum-shaped object realized through negative phototactic interactions with the APs. We…

Soft Condensed Matter · Physics 2025-09-30 Timo Knippenberg , Robin Bebon , Thomas Speck , Clemens Bechinger

Many biological processes are supported by special molecules, called motor proteins or molecular motors, that transport cellular cargoes along linear protein filaments and can reversibly associate to their tracks. Stimulated by these…

Statistical Mechanics · Physics 2021-11-17 Akriti Jindal , Anatoly B. Kolomeisky , Arvind Kumar Gupta

We numerically study the dynamics of cold atoms in a two-dimensional disordered potential. We consider an anisotropic speckle potential and focus on the classical regime, which is relevant to some recent experiments. First, we study the…

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