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Biclustering, also called co-clustering, block clustering, or two-way clustering, involves the simultaneous clustering of both the rows and columns of a data matrix into distinct groups, such that the rows and columns within a group display…

Optimization and Control · Mathematics 2024-12-06 Antonio M. Sudoso

Graph isomorphism problem is a known hard problem. In this paper, a novel randomized algorithm is proposed for this problem which is very simple and fast. It solves the graph isomorphism problem with running time O(n^2.373) for any pair of…

Combinatorics · Mathematics 2019-09-25 Ameneh Farhadian

Kernelization algorithms for the {\sc cluster editing} problem have been a popular topic in the recent research in parameterized computation. Thus far most kernelization algorithms for this problem are based on the concept of {\it critical…

Data Structures and Algorithms · Computer Science 2015-05-19 Yixin Cao , Jianer Chen

Many common graph data mining tasks take the form of identifying dense subgraphs (e.g. clustering, clique-finding, etc). In biological applications, the natural model for these dense substructures is often a complete bipartite graph…

Data Structures and Algorithms · Computer Science 2019-01-28 Kyle Kloster , Blair D. Sullivan , Andrew van der Poel

A directed graph $G$ is called a pumpkin if $G$ is a union of induced paths with a common start vertex $s$ and a common end vertex $t$, and the internal vertices of every two paths are disjoint. We give an algorithm that given a directed…

Data Structures and Algorithms · Computer Science 2019-01-10 Dekel Tsur

The previously fastest algorithm for deciding the existence of an independent cut had a runtime of $\mathcal{O}^*(1.4423^n)$, where $n$ is the order of the input graph. We improve this to $\mathcal{O}^*(1.4143^n)$. In fact, we prove a…

Data Structures and Algorithms · Computer Science 2025-05-22 Vsevolod Chernyshev , Johannes Rauch , Dieter Rautenbach , Liliia Redina

The edit distance of two strings is the minimum number of insertions, deletions, and substitutions of characters needed to transform one string into the other. The textbook dynamic-programming algorithm computes the edit distance of two…

Data Structures and Algorithms · Computer Science 2023-10-25 Alejandro Cassis , Tomasz Kociumaka , Philip Wellnitz

We present a dynamic programming algorithm for optimally solving the Cograph Editing problem on an $n$-vertex graph that runs in $O(3^n n)$ time and uses $O(2^n)$ space. In this problem, we are given a graph $G = (V, E)$ and the task is to…

Data Structures and Algorithms · Computer Science 2018-01-11 W. Timothy J. White , Marcus Ludwig , Sebastian Böcker

In graph modification problems, one is given a graph G and the goal is to apply a minimum number of modification operations (such as edge deletions) to G such that the resulting graph fulfills a certain property. For example, the Cluster…

Data Structures and Algorithms · Computer Science 2016-06-13 Christian Komusiewicz , André Nichterlein , Rolf Niedermeier

In the Proper Interval Completion problem we are given a graph G and an integer k, and the task is to turn G using at most k edge additions into a proper interval graph, i.e., a graph admitting an intersection model of equal-length…

Data Structures and Algorithms · Computer Science 2014-02-17 Ivan Bliznets , Fedor V. Fomin , Marcin Pilipczuk , Michał Pilipczuk

In the Cluster Editing problem, sometimes known as (unweighted) Correlation Clustering, we must insert and delete a minimum number of edges to achieve a graph in which every connected component is a clique. Owing to its applications in…

Data Structures and Algorithms · Computer Science 2024-12-18 Manuel Lafond , Alitzel López Sánchez , Weidong Luo

In the {\sc Min-Sum 2-Clustering} problem, we are given a graph and a parameter $k$, and the goal is to determine if there exists a 2-partition of the vertex set such that the total conflict number is at most $k$, where the conflict number…

Data Structures and Algorithms · Computer Science 2014-04-11 Bang Ye Wu , Li-Hsuan Chen

Given a context free language $\mathcal{L(G)}$ over alphabet $\Sigma$ and a string $s \in \Sigma^*$, {\em the language edit distance} problem seeks the minimum number of edits (insertions, deletions and substitutions) required to convert…

Data Structures and Algorithms · Computer Science 2024-10-25 Tomasz Kociumaka , Barna Saha

The aim of edge editing or modification problems is to change a given graph by adding and deleting of a small number of edges in order to satisfy a certain property. We consider the Edge Editing to a Connected Graph of Given Degrees problem…

Data Structures and Algorithms · Computer Science 2014-06-05 Petr A. Golovach

A graph $H$ is a clique graph if $H$ is a vertex-disjoin union of cliques. Abu-Khzam (2017) introduced the $(a,d)$-{Cluster Editing} problem, where for fixed natural numbers $a,d$, given a graph $G$ and vertex-weights $a^*:\ V(G)\rightarrow…

Data Structures and Algorithms · Computer Science 2023-07-06 Gregory Gutin , Anders Yeo

A permutation graph can be defined as an intersection graph of segments whose endpoints lie on two parallel lines $l_1$ and $l_2$, one on each. A bipartite permutation graph is a permutation graph which is bipartite. In this paper we study…

Data Structures and Algorithms · Computer Science 2020-11-03 Łukasz Bożyk , Jan Derbisz , Tomasz Krawczyk , Jana Novotná , Karolina Okrasa

We initiate the study of the Bipartite Contraction problem from the perspective of parameterized complexity. In this problem we are given a graph $G$ and an integer $k$, and the task is to determine whether we can obtain a bipartite graph…

Data Structures and Algorithms · Computer Science 2011-03-08 Pinar Heggernes , Pim van 't Hof , Daniel Lokshtanov , Christophe Paul

The problem of identifying the maximum edge biclique in bipartite graphs has attracted considerable attention in bipartite graph analysis, with numerous real-world applications such as fraud detection, community detection, and online…

Data Structures and Algorithms · Computer Science 2025-06-23 Donghang Cui , Ronghua Li , Qiangqiang Dai , Hongchao Qin , Guoren Wang

This paper presents an $O^{*}(1.42^{n})$ time algorithm for the Maximum Cut problem on split graphs, along with a subexponential time algorithm for its decision variant.

Data Structures and Algorithms · Computer Science 2024-06-03 Marko Lalovic

Identifying dense bipartite subgraphs is a common graph data mining task. Many applications focus on the enumeration of all maximal bicliques (MBs), though sometimes the stricter variant of maximal induced bicliques (MIBs) is of interest.…

Data Structures and Algorithms · Computer Science 2019-03-06 Blair D. Sullivan , Andrew van der Poel , Trey Woodlief