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We analyzed folding routes predicted by a variational model in terms of a generalized formalism of the capillarity scaling theory for 28 two-state proteins. The scaling exponent ranged from 0.2 to 0.45 with an average of 0.33. This average…

Biomolecules · Quantitative Biology 2007-12-14 Xianghon Qi , John J. Portman

Membrane pores are implicated in several critical functions, including cell fusion and the transport of signaling molecules for intercellular communication. However, these structural features are often difficult to probe directly. Droplet…

Soft Condensed Matter · Physics 2025-11-13 Nivedina A. Sarma , David A. King , Xuefei Wu , Brett A. Helms , Paul D. Ashby , Thomas P. Russell , Ahmad K. Omar

We use scaling arguments and coarse grained Monte Carlo simulations to study the fluctuation mediated interactions between a pair of adhesion sites of a bilayer membrane and a supporting surface. We find that the potential of mean force is…

Soft Condensed Matter · Physics 2015-05-18 Oded Farago

Eukaryote cells have a flexible shape, which dynamically changes according to the function performed by the cell. One mechanism for deforming the cell membrane into the desired shape is through the expression of curved membrane proteins.…

Biological Physics · Physics 2018-12-05 Miha Fošnarič , Samo Penič , Aleš Iglič , Veronika Kralj-Iglič , Mitja Drab , Nir Gov

The coarsening process in a class of driven systems exhibiting striped structures is studied. The dynamics is governed by the motion of the driven interfaces between the stripes. When two interfaces meet they coalesce thus giving rise to a…

Statistical Mechanics · Physics 2009-10-31 M. R. Evans , Y. Kafri , E. Levine , D. Mukamel

We investigate the dynamics of an intruder pulled by a constant force in a dense two-dimensional granular fluid by means of event-driven molecular dynamics simulations. In a first step, we show how a propagating momentum front develops and…

Statistical Mechanics · Physics 2012-02-29 Andrea Fiege , Matthias Grob , Annette Zippelius

Purely repulsive active particles spontaneously undergo motility-induced phase separation (MIPS) into condensed and dilute phases. Remarkably, the mechanical tension measured along the interface between these phases is negative. In…

Soft Condensed Matter · Physics 2018-10-31 Adam Patch , Daniel Sussman , David Yllanes , M. Cristina Marchetti

The Raise and Peel model is a recently proposed one-dimensional statistical model describing a fluctuating interface. The evolution of the model follows from the competition between adsorption and desorption processes. The model is…

Statistical Mechanics · Physics 2009-11-11 Matteo Beccaria , Massimo Campostrini , Alessandra Feo

The fiber bundle model is essentially an array of elements that break when sufficient load is applied on them. With a local loading mechanism, this can serve as a model for a one-dimensional interface separating the broken and unbroken…

Statistical Mechanics · Physics 2016-11-09 Soumyajyoti Biswas , Lucas Goehring

The formation of interface from an initial sharp interface in polydisperse A/B blends is studied using the external potential dynamic method. The present model is a nonlocal coupling model as we take into account the correlation between…

Soft Condensed Matter · Physics 2015-05-13 Shuanhu Qi , Xinghu Zhang , Dadong Yan

A coarse grained description of a two phase fluid is used to study the steady state configuration of the interface separating the coexisting phases, and the motion of the contact line at which the interface intersects a solid boundary. The…

Statistical Mechanics · Physics 2009-10-31 Hsuan-Yi Chen , David Jasnow , Jorge Vinals

Soft colloids are increasingly used as model systems to address fundamental issues such as crystallisation and the glass and jamming transitions. Among the available classes of soft colloids, microgels are emerging as the gold standard.…

We present a subcritical fracture growth model, coupled with the elastic redistribution of the acting mechanical stress along rugous rupture fronts. We show the ability of this model to quantitatively reproduce the intermittent dynamics of…

We continue to study a model of disordered interface growth in two dimensions. The interface is given by a height function on the sites of the one--dimensional integer lattice and grows in discrete time: (1) the height above the site $x$…

Probability · Mathematics 2007-05-23 Janko Gravner , Craig A. Tracy , Harold Widom

The movement of a purely elastic interface driven on a disordered energy potential is characterized by a depinning transition: when the pulling force S is larger than some critical value S_1 the system is in a flowing regime and moves at a…

Statistical Mechanics · Physics 2015-06-17 E. A. Jagla

We study a generalization of the Wolf-Villain (WV) interface growth model based on a probabilistic growth rule. In the WV model, particles are randomly deposited onto a substrate and subsequently move to a position nearby where the binding…

Statistical Mechanics · Physics 2015-03-19 S G Alves , J G Moreira

We consider the hydrodynamics of lipid bilayers containing transmembrane proteins of arbitrary shape. This biologically-motivated problem is relevant to the cell membrane, whose fluctuating dynamics play a key role in phenomena ranging from…

Soft Condensed Matter · Physics 2016-10-10 Andrew Callan-Jones , Marc Durand , Jean-Baptiste Fournier

While equilibrium interfaces display universal large-scale statistics, interfaces in phase-separated active and driven systems are predicted to belong to distinct non-equilibrium universality classes. Yet, such behavior has proven difficult…

Statistical Mechanics · Physics 2026-04-08 Raphaël Maire , Andrea Plati , Frank Smallenburg , Giuseppe Foffi

We consider a diffuse interface model for tumor growth recently proposed in [Y. Chen, S.M. Wise, V.B. Shenoy, J.S. Lowengrub, A stable scheme for a nonlinear, multiphase tumor growth model with an elastic membrane, Int. J. Numer. Methods…

Analysis of PDEs · Mathematics 2015-07-29 Mimi Dai , Eduard Feireisl , Elisabetta Rocca , Giulio Schimperna , Maria Schonbek

Collective and directed motility or swarming is an emergent phenomenon displayed by many self-organized assemblies of active biological matter such as clusters of embryonic cells during tissue development, cancerous cells during tumor…

Biological Physics · Physics 2016-04-05 Katherine Copenhagen , Ajay Gopinathan
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