Related papers: Gr\"obner bases for staged trees
In this paper, we study a class of toric ideals obtained by using some geometric data of ADE trees which are the minimal resolution graphs of rational surface singularities. We compute explicit Gr\"obner bases for these toric ideals that…
We introduce and study the toric fiber product of two ideals in polynomial rings that are homogeneous with respect to the same multigrading. Under the assumption that the set of degrees of the variables form a linearly independent set, we…
We describe a generating set for the initial ideal of simplicial toric ideals with respect to the graded reverse lexicographic order, using representations of elements of affine monoids as sums of irreducible elements. Although the…
We consider the phylogenetic tree model in which every node of the tree is observed and binary and the transitions are given by the same matrix on each edge of the tree. We are able to compute the Grobner basis and Markov basis of the toric…
In 1980, White conjectured that the toric ideal of a matroid is generated by quadratic binomials corresponding to a symmetric exchange. In this paper, we compute Gr\"obner bases of toric ideals associated with matroids and show that, for…
In the present paper, we prove that the toric ideals of certain $s$-block diagonal matching fields have quadratic Gr\"obner bases. Thus, in particular, those are quadratically generated. By using this result, we provide a new family of…
A staged tree model is a discrete statistical model encoding relationships between events. These models are realised by directed trees with coloured vertices. In algebro-geometric terms, the model consists of points inside a toric variety.…
We show that the toric ideal of a lattice path polymatroid is generated by quadrics corresponding to symmetric exchanges, and give a monomial order under which these quadrics form a Gr\"obner basis. We then obtain an analogous result for…
Statistical models of evolution are algebraic varieties in the space of joint probability distributions on the leaf colorations of a phylogenetic tree. The phylogenetic invariants of a model are the polynomials which vanish on the variety.…
In 1980, White conjectured that the toric ideal associated to a matroid is generated by binomials corresponding to a symmetric exchange. In this paper, we prove that classes of matroids for which the toric ideal is generated by quadrics and…
Characteristic imsets are 0-1 vectors which correspond to Markov equivalence classes of directed acyclic graphs. The study of their convex hull, named the characteristic imset polytope, has led to new and interesting geometric perspectives…
Let $G$ be a simple graph on the vertex set $\{1,\ldots,n\}$ with $m$ edges. An algebraic object attached to $G$ is the ideal $P_{G}$ generated by diagonal 2-minors of an $n \times n$ matrix of variables. In this paper we prove that if $G$…
In combinatorial commutative algebra and algebraic statistics many toric ideals are constructed from graphs. Keeping the categorical structure of graphs in mind we give previous results a more functorial context and generalize them by…
Let I be the toric ideal of a homogeneous normal configuration. We prove that I is generated by circuits if and only if each unbalanced circuit of I has a "connector" which is a linear combination of circuits with a square-free term. In…
The toric ring together with the toric ideal arising from a nested configuration is studied, with particular attention given to the algebraic study of normality of the toric ring as well as the Gr\"obner bases of the toric ideal. One of the…
Hara, Takemura and Yoshida discuss toric ideals arising from two way subtable sum problems and shows that these toric ideals are generated by quadratic binomials if and only if the subtables are either diagonal or triangular. In the present…
In this paper, we discuss the normality of the toric rings of stable set polytopes, and the set of generators and Gr\"obner bases of toric ideals of stable set polytopes by using the results on that of edge polytopes of finite nonsimple…
We call an ideal in a polynomial ring robust if it can be minimally generated by a universal Gr\"obner basis. In this paper we show that robust toric ideals generated by quadrics are essentially determinantal. We then discuss two possible…
In this paper, we study toric ideals generated by circuits. For toric ideals which have squarefree quadratic initial ideals, a sufficient condition to be generated by circuits is given. In particular, squarefree Veronese subrings, the…
To any toric ideal $I_A$, encoded by an integer matrix $A$, we associate a matroid structure called {\em the bouquet graph} of $A$ and introduce another toric ideal called {\em the bouquet ideal} of $A$. We show how these objects capture…