Related papers: Gr\"obner bases for staged trees
The universal Gr\"obner basis of an ideal is a Gr\"obner basis with respect to all term orders simultaneously. The aim of this paper is to present an algorithmic approach to compute the universal Gr\"obner basis for the toric ideal…
We introduce balanced polyominoes and show that their ideal of inner minors is a prime ideal and has a quadratic Gr\"obner basis with respect to any monomial order, and we show that any row or column convex and any tree-like polyomino is…
In this paper we introduce a new and large family of configurations whose toric ideals possess quadratic Groebner bases. As an application, a generalization of algebras of Segre-Veronese type will be studied.
The toric fiber product is a general procedure for gluing two ideals, homogeneous with respect to the same multigrading, to produce a new homogeneous ideal. Toric fiber products generalize familiar constructions in commutative algebra like…
Let K be a field and let m_0,...,m_{n} be an almost arithmetic sequence of positive integers. Let C be a toric variety in the affine (n+1)-space, defined parametrically by x_0=t^{m_0},...,x_{n}=t^{m_{n}}. In this paper we produce a minimal…
In this paper, we study toric ideals associated with multichains of posets. It is shown that the comparability graph of a poset is chordal if and only if there exists a quadratic Gr\"obner basis of the toric ideal of the poset. Strong…
We address the problem of studying the toric ideals of phylogenetic invariants for a general group-based model on an arbitrary claw tree. We focus on the group $\mathbb Z_2$ and choose a natural recursive approach that extends to other…
Associated to any vector configuration A is a toric ideal encoded by vectors in the kernel of A. Each toric ideal has two special generating sets: the universal Gr\"obner basis and the Graver basis. While the former is generally a proper…
Two correspondences have been provided that associate any linear code over a finite field with a binomial ideal. In this paper, algorithms for computing their Graver bases and universal Gr\"obner bases are given. To this end, a connection…
We describe explicitly all multisets of weights whose defining projective toric varieties are self-dual. In addition, we describe a remarkable and unexpected combinatorial behaviour of the defining ideals of these varieties. The toric ideal…
We investigate Gr\"obner bases of contraction ideals under some monomial homomorphisms. As an application of our theorem, we generalize the result of Aoki--Hibi--Ohsugi--Takemura and Hibi-Ohsugi. Using our results, one can provide many…
We study the combinatorics of Gr\"obner degenerations of Grassmannians and the Schubert varieties inside them. We provide a family of binomial ideals whose combinatorics is governed by tableaux induced by matching fields in the sense of…
A graph-theoretic method, simpler than existing ones, is used to characterize the minimal set of monomial generators for the integral closure of any algebra of polynomials generated by quadratic monomials. The toric ideal of relations…
The universal Gr\"{o}bner basis of $I$, is a Gr\"{o}bner basis for $I$ with respect to all term orders simultaneously. Let $I_G$ be the toric ideal of a graph $G$. We characterize in graph theoretical terms the elements of the universal…
Given a finite, simple, vertex-weighted graph, we construct a graded associative (non-commutative) algebra, whose generators correspond to vertices and whose ideal of relations has generators that are graded commutators corresponding to…
An ideal I is robust if its universal Gr\"obner basis is a minimal generating set for this ideal. In this paper, we generalize the meaning of robust ideals. An ideal is defined as generalized robust if its universal Gr\"obner basis is equal…
Given any equigenerated monomial ideal $I$ with the property that the defining ideal $J$ of the fiber cone $ F(I)$ of $I$ is generated by quadratic binomials, we introduce a matrix such that the set of its binomial $2$-minors is a…
The toric ideals of $3\times 3$ transportation polytopes $T$ are quadratically generated. The only exception is the Birkhoff polytope $B_3$. If $T$ is not a multiple of $B_3$, these ideals even have squarefree quadratic initial ideals. This…
We study how to lift Markov bases and Gr\"obner bases along linear maps of lattices. We give a lifting algorithm that allows to compute such bases iteratively provided a certain associated semigroup is normal. Our main application is the…
Let $G$ be a finite connected simple graph and $I_{G}$ the toric ideal of the edge ring $K[G]$ of $G$. In the present paper, we study finite graphs $G$ with the property that $I_{G}$ is generated by quadratic binomials and $I_{G}$ possesses…