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Evolutionary and ecosystem dynamics are often treated as different processes --operating at separate timescales-- even if evidence reveals that rapid evolutionary changes can feed back into ecological interactions. A recent long-term field…

Populations and Evolution · Quantitative Biology 2018-10-04 Paula Villa Martín , Jorge Hidalgo , Rafael Rubio de Casas , Miguel A. Muñoz

Metapopulation models have been instrumental in demonstrating the ecological impact of landscape structure on the survival of a focal species in complex environments. However, extensions to multiple species with arbitrary dispersal networks…

Populations and Evolution · Quantitative Biology 2024-11-06 Prajwal Padmanabha , Giorgio Nicoletti , Davide Bernardi , Samir Suweis , Sandro Azaele , Andrea Rinaldo , Amos Maritan

Machine learning models play a vital role in the prediction task in several fields of study. In this work, we utilize the ability of machine learning algorithms to predict the occurrence of extreme events in a nonlinear mechanical system.…

Machine Learning · Computer Science 2021-12-03 J. Meiyazhagan , S. Sudharsan , A. Venkatasen , M. Senthilvelan

We model evolution of plants in a world, made up of different locations, with multiple environments (mutually exclusive and collectively exhaustive subsets of locations). Each environment (landmass) has temperature, rainfall, and other…

Populations and Evolution · Quantitative Biology 2019-05-27 Alexander , Khazatsky , Albert Yu , Zihao Zhao , Gabe Zuckerman

To create state-of-the-art models for many downstream tasks, it has become common practice to fine-tune a pre-trained large vision model. However, it remains an open question of how to best determine which of the many possible model…

Machine Learning · Computer Science 2025-12-08 Simon Guiroy , Mats Richter , Sarath Chandar , Christopher Pal

Plant traits such as leaf carbon content and leaf mass are essential variables in the study of biodiversity and climate change. However, conventional field sampling cannot feasibly cover trait variation at ecologically meaningful spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Eya Cherif , Arthur Ouaknine , Luke A. Brown , Phuong D. Dao , Kyle R. Kovach , Bing Lu , Daniel Mederer , Hannes Feilhauer , Teja Kattenborn , David Rolnick

Coexistence of individuals with different species or phenotypes is often found in nature in spite of competition between them. Stable coexistence of multiple types of individuals have implications for maintenance of ecological biodiversity…

Disordered Systems and Neural Networks · Physics 2007-05-23 Naoki Masuda , Norio Konno

This paper introduces a new methodology for extreme spatial dependence structure selection. It is based on deep learning techniques, specifically Convolutional Neural Networks -CNNs. Two schemes are considered: in the first scheme, the…

Data Analysis, Statistics and Probability · Physics 2024-09-23 Manaf Ahmed , Véronique Maume-Deschamps , Pierre Ribereau

We present a method for using neural networks to model evolutionary population dynamics, and draw parallels to recent deep learning advancements in which adversarially-trained neural networks engage in coevolutionary interactions. We…

Neural and Evolutionary Computing · Computer Science 2018-04-13 Nick Moran , Jordan Pollack

Ecological systems are governed by complex interactions which are mainly nonlinear. In order to capture this complexity and nonlinearity, statistical models recently gained popularity. However, although these models are commonly applied in…

Quantitative Methods · Quantitative Biology 2011-07-29 Can Ozan Tan , Uygar Ozesmi , Meryem Beklioglu , Esra Per , Bahtiyar Kurt

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional methods frequently struggle with the inherent complexity,…

Machine Learning · Computer Science 2025-03-06 Runlong Yu , Shengyu Chen , Yiqun Xie , Xiaowei Jia

We study the statistics of ecosystems with a variable number of co-evolving species. The species interact in two ways: by prey-predator relationships and by direct competition with similar kinds. The interaction coefficients change slowly…

Adaptation and Self-Organizing Systems · Physics 2015-06-26 Michael Lassig , Ugo Bastolla , Susanna C. Manrubia , Angelo Valleriani

We present new theoretical and empirical results on the probability distributions of species persistence times in natural ecosystems. Persistence times, defined as the timespans occurring between species' colonization and local extinction…

Populations and Evolution · Quantitative Biology 2012-03-21 S. Suweis , E. Bertuzzo , L. Mari , I. Rodriguez-Iturbe , A. Maritan , A. Rinaldo

Occupancy models are frequently used by ecologists to quantify spatial variation in species distributions while accounting for observational biases in the collection of detection-nondetection data. However, the common assumption that a…

Detecting extreme events in large datasets is a major challenge in climate science research. Current algorithms for extreme event detection are build upon human expertise in defining events based on subjective thresholds of relevant…

Computer Vision and Pattern Recognition · Computer Science 2016-05-05 Yunjie Liu , Evan Racah , Prabhat , Joaquin Correa , Amir Khosrowshahi , David Lavers , Kenneth Kunkel , Michael Wehner , William Collins

Mixed-effects models are among the most commonly used statistical methods for the exploration of multispecies data. In recent years, also Joint Species Distribution Models and Generalized Linear Latent Variale Models have gained in…

Computation · Statistics 2025-01-31 Bert van der Veen , Robert Brian O'Hara

Natural ecosystems are characterized by striking diversity of form and functions and yet exhibit deep symmetries emerging across scales of space, time and organizational complexity. Species-area relationships and species-abundance…

Using deep neural networks as computational models to simulate cognitive process can provide key insights into human behavioral dynamics. Challenges arise when environments are highly dynamic, obscuring stimulus-behavior relationships.…

Artificial Intelligence · Computer Science 2025-05-28 Songlin Xu , Xinyu Zhang

Models of invasive species spread often assume that landscapes are spatially homogeneous; thus simplifying analysis but potentially reducing accuracy. We extend a recently developed partial differential equation model for invasive conifer…

Populations and Evolution · Quantitative Biology 2023-09-14 Elliott Hughes , Miguel Moyers-Gonzalez , Rua Murray , Phillip L. Wilson

The rapid expansion of citizen science initiatives has led to a significant growth of biodiversity databases, and particularly presence-only (PO) observations. PO data are invaluable for understanding species distributions and their…

Machine Learning · Computer Science 2026-01-14 Maxime Ryckewaert , Diego Marcos , Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly