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Ecological networks describe the interactions between different species, informing us of how they rely on one another for food, pollination and survival. If a species in an ecosystem is under threat of extinction, it can affect other…

Populations and Evolution · Quantitative Biology 2023-07-06 Chris Jones , Damaris Zurell , Karoline Wiesner

Efficient on-device models have become attractive for near-sensor insight generation, of particular interest to the ecological conservation community. For this reason, deep learning researchers are proposing more approaches to develop lower…

Computer Vision and Pattern Recognition · Computer Science 2025-04-14 Emmanuel Azuh Mensah , Joban Mand , Yueheng Ou , Min Jang , Kurtis Heimerl

Accurate predictions and representations of plant growth patterns in simulated and controlled environments are important for addressing various challenges in plant phenomics research. This review explores various works on state-of-the-art…

Quantitative Methods · Quantitative Biology 2025-07-17 Mohamed Debbagh , Shangpeng Sun , Mark Lefsrud

Local coexistence of species in large ecosystems is traditionally explained within the broad framework of niche theory. However, its rationale hardly justifies rich biodiversity observed in nearly homogeneous environments. Here we consider…

Populations and Evolution · Quantitative Biology 2021-11-17 Deepak Gupta , Stefano Garlaschi , Samir Suweis , Sandro Azaele , Amos Maritan

The difficulty to measure or predict species community composition at fine spatio-temporal resolution and over large spatial scales severely hampers our ability to understand species assemblages and take appropriate conservation measures.…

In all but the most trivial optimization problems, the structure of the solutions exhibit complex interdependencies between the input parameters. Decades of research with stochastic search techniques has shown the benefit of explicitly…

Neural and Evolutionary Computing · Computer Science 2017-03-23 Shumeet Baluja

Despite deep-learning being state-of-the-art for data-driven model predictions, it has not yet found frequent application in ecology. Given the low sample size typical in many environmental research fields, the default choice for the…

Applications · Statistics 2022-09-29 Marieke Wesselkamp , Niklas Moser , Maria Kalweit , Joschka Boedecker , Carsten F. Dormann

This paper proposes a cooperative environmental learning algorithm working in a fully distributed manner. A multi-robot system is more effective for exploration tasks than a single robot, but it involves the following challenges: 1) online…

Robotics · Computer Science 2021-12-30 Dohyun Jang , Jaehyun Yoo , Clark Youngdong Son , H. Jin Kim

Microorganisms are found in almost every environment, including the soil, water, air, and inside other organisms, like animals and plants. While some microorganisms cause diseases, most of them help in biological processes such as…

Machine Learning · Computer Science 2023-09-28 Daniel Agyapong , Jeffrey Ryan Propster , Jane Marks , Toby Dylan Hocking

In ecology we may find scenarios where the same phenomenon (species occurrence, species abundance, etc.) is observed using two different types of samplers. For instance, species data can be collected from scientific sampling with a…

We create a novel optimisation technique inspired by natural ecosystems, where the optimisation works at two levels: a first optimisation, migration of genes which are distributed in a peer-to-peer network, operating continuously in time;…

Neural and Evolutionary Computing · Computer Science 2012-11-26 Gerard Briscoe , Philippe De Wilde

Deep learning has shown state-of-art classification performance on datasets such as ImageNet, which contain a single object in each image. However, multi-object classification is far more challenging. We present a unified framework which…

Computer Vision and Pattern Recognition · Computer Science 2015-05-05 Tejaswi Nimmagadda , Anima Anandkumar

The behavior of ecological systems mainly relies on the interactions between the species it involves. We consider the problem of inferring the species interaction network from abundance data. To be relevant, any network inference…

Applications · Statistics 2019-10-29 Raphaëlle Momal , Stéphane Robin , Christophe Ambroise

Species distribution models (SDMs), which aim to predict species occurrence based on environmental variables, are widely used to monitor and respond to biodiversity change. Recent deep learning advances for SDMs have been shown to perform…

Machine Learning · Computer Science 2025-11-14 Catherine Villeneuve , Benjamin Akera , Mélisande Teng , David Rolnick

Development of air pollution models for large regions is a priority for population-based epidemiologic studies. The rapid development of big data information systems and machine learning algorithms have opened new grounds for refinements of…

Applications · Statistics 2022-11-18 Manuel Ribeiro

Machine learning methods have had spectacular success on numerous problems. Here we show that a prominent class of learning algorithms - including Support Vector Machines (SVMs) -- have a natural interpretation in terms of ecological…

Machine Learning · Computer Science 2020-08-26 Owen Howell , Cui Wenping , Robert Marsland , Pankaj Mehta

Decision Trees and Random Forests are among the most widely used machine learning models, and often achieve state-of-the-art performance in tabular, domain-agnostic datasets. Nonetheless, being primarily discriminative models they lack…

Machine Learning · Statistics 2020-07-14 Alvaro H. C. Correia , Robert Peharz , Cassio de Campos

Neural networks and evolutionary computation have a rich intertwined history. They most commonly appear together when an evolutionary algorithm optimises the parameters and topology of a neural network for reinforcement learning problems,…

Neural and Evolutionary Computing · Computer Science 2016-04-15 Alexander W. Churchill , Siddharth Sigtia , Chrisantha Fernando

We present an end-to-end deep network for fine-grained visual categorization called Collaborative Convolutional Network (CoCoNet). The network uses a collaborative layer after the convolutional layers to represent an image as an optimal…

Computer Vision and Pattern Recognition · Computer Science 2020-11-11 Tapabrata Chakraborti , Brendan McCane , Steven Mills , Umapada Pal

Object recognition and localization are important tasks in computer vision. The focus of this work is the incorporation of contextual information in order to improve object recognition and localization. For instance, it is natural to expect…

Computer Vision and Pattern Recognition · Computer Science 2013-12-23 Samy Bengio , Jeff Dean , Dumitru Erhan , Eugene Ie , Quoc Le , Andrew Rabinovich , Jonathon Shlens , Yoram Singer