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While every rooted binary phylogenetic tree is determined by its set of displayed rooted triples, such a result does not hold for an arbitrary rooted binary phylogenetic network. In particular, there exist two non-isomorphic rooted binary…
An and/or tree is usually a binary plane tree, with internal nodes labelled by logical connectives, and with leaves labelled by literals chosen in a fixed set of k variables and their negations. In the present paper, we introduce the first…
We analyze union-find using potential functions motivated by continuous algorithms, and give alternate proofs of the $O(\log\log{n})$, $O(\log^{*}n)$, $O(\log^{**}n)$, and $O(\alpha(n))$ amortized cost upper bounds. The proof of the…
We study the enumeration problem for different kind of tree parking functions introduced recently, called tree parking functions, tree parking distributions, prime tree parking functions, and prime tree parking distributions, for rooted…
Rooted binary phylogenetic networks are extensions of rooted binary trees, adding reticulation nodes that are designed to represent evolutionary processes that involve hybridization events. Enumerative combinatorics studies have counted…
We introduce regenerative tree growth processes as consistent families of random trees with n labelled leaves, n>=1, with a regenerative property at branch points. This framework includes growth processes for exchangeably labelled Markov…
We define a special case of tree decompositions for planar graphs that respect a given embedding of the graph. We study the analogous width of the resulting decomposition we call the embedded-width of a plane graph. We show both upper…
Binary trees are fundamental objects in models of evolutionary biology and population genetics. Here, we discuss some of their combinatorial and structural properties as they depend on the tree class considered. Furthermore, the process by…
We present a new definition of non-ambiguous trees (NATs) as labelled binary trees. We thus get a differential equation whose solution can be described combinatorially. This yield a new formula for the number of NATs. We also obtain…
Trees are useful entities allowing to model data structures and hierarchical relationships in networked decision systems ubiquitously. An ordered tree is a rooted tree where the order of the subtrees (children) of a node is significant. In…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
When considering the number of subtrees of trees, the extremal structures which maximize this number among binary trees and trees with a given maximum degree lead to some interesting facts that correlate to other graphical indices in…
The class of self-nested trees presents remarkable compression properties because of the systematic repetition of subtrees in their structure. In this paper, we provide a better combinatorial characterization of this specific family of…
Given $t\geq 2$ and $0\leq k\leq t$, we prove that the number of labelled $k$-connected chordal graphs with $n$ vertices and tree-width at most $t$ is asymptotically $c n^{-5/2} \gamma^n n!$, as $n\to\infty$, for some constants $c,\gamma…
We consider the classical Smoluchowski coagulation equation with a general frequency kernel. We show that there exists a natural deterministic solution expansion in the non-associative algebra generated by the convolution product of the…
Tree-child networks are a recently-described class of directed acyclic graphs that have risen to prominence in phylogenetics (the study of evolutionary trees and networks). Although these networks have a number of attractive mathematical…
In this paper we consider the enumeration of binary trees avoiding non-contiguous binary tree patterns. We begin by computing closed formulas for the number of trees avoiding a single binary tree pattern with 4 or fewer leaves and compare…
In order to obtain the full asymptotic expansion for Polya trees, i.e. rooted unlabelled and non-plane trees, Flajolet and Sedgewick observed that their specification could be seen as a slight disturbance of the functional equation…
For a given metric space $(P,\phi)$, a tree cover of stretch $t$ is a collection of trees on $P$ such that edges $(x,y)$ of trees receive length $\phi(x,y)$, and such that for any pair of points $u,v\in P$ there is a tree $T$ in the…
Inspired by the infinite families of finite and affine root systems, we consider a "stretching" operation on general crystallographic root systems which, on the level of Coxeter diagrams, replaces a vertex with a path of unlabeled edges. We…