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Rapidly growing data sizes of scientific simulations pose significant challenges for interactive visualization and analysis techniques. In this work, we propose a compact probabilistic representation to interactively visualize large…

Graphics · Computer Science 2020-10-16 Tobias Rapp , Christoph Peters , Carsten Dachsbacher

Software ecosystems have had a tremendous impact on computing and society, capturing the attention of businesses, researchers, and policy makers alike. Massive ecosystems like the JavaScript node package manager (npm) is evidence of how…

Contour trees describe the topology of level sets in scalar fields and are widely used in topological data analysis and visualization. A main challenge of utilizing contour trees for large-scale scientific data is their computation at scale…

Computational Geometry · Computer Science 2024-10-01 Mingzhe Li , Hamish Carr , Oliver Rübel , Bei Wang , Gunther H. Weber

Data visualization techniques proffer efficient means to organize and present data in graphically appealing formats, which not only speeds up the process of decision making and pattern recognition but also enables decision-makers to fully…

Digital Libraries · Computer Science 2020-09-29 Shashwat Aggarwal , Ramesh Singh

Treemaps have been used in information visualisation for over two decades. They make use of nested filled areas to represent information hierarchies such as file systems, library catalogues, etc. Recent years have witnessed the emergence of…

Human-Computer Interaction · Computer Science 2019-09-23 Patrick Cheong-Iao Pang , Robert P. Biuk-Aghai , Simon Fong , Yain-Whar Si

Data visualizations summarize high-dimensional distributions in two or three dimensions. Dimensionality reduction entails a loss of information, and what is preserved differs between methods. Existing methods preserve the local or the…

Computation · Statistics 2021-07-05 Andrew D Zaharia , Anish S Potnis , Alexander Walther , Nikolaus Kriegeskorte

The Mapper algorithm, a technique within topological data analysis (TDA), constructs a simplified graphical representation of high-dimensional data to uncover its underlying shape and structural patterns. The algorithm has attracted…

General Topology · Mathematics 2025-04-15 Vine Nwabuisi Madukpe , Bright Chukwuma Ugoala , Nur Fariha Syaqina Zulkepli

The automatic analysis of chemical literature has immense potential to accelerate the discovery of new materials and drugs. Much of the critical information in patent documents and scientific articles is contained in figures, depicting the…

Computer Vision and Pattern Recognition · Computer Science 2024-08-29 Lucas Morin , Martin Danelljan , Maria Isabel Agea , Ahmed Nassar , Valery Weber , Ingmar Meijer , Peter Staar , Fisher Yu

Data visualisation is a key tool in data mining for understanding big datasets. Many visualisation methods have been proposed, including the well-regarded state-of-the-art method t-Distributed Stochastic Neighbour Embedding. However, the…

Neural and Evolutionary Computing · Computer Science 2020-01-29 Andrew Lensen , Bing Xue , Mengjie Zhang

Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

Visualizing high-dimensional data has been a focus in data analysis communities for decades, which has led to the design of many algorithms, some of which are now considered references (such as t-SNE for example). In our era of overwhelming…

Machine Learning · Computer Science 2017-02-21 Johan Paratte , Nathanaël Perraudin , Pierre Vandergheynst

We present ShapeVis, a scalable visualization technique for point cloud data inspired from topological data analysis. Our method captures the underlying geometric and topological structure of the data in a compressed graphical…

Machine Learning · Computer Science 2020-01-22 Nupur Kumari , Siddarth R. , Akash Rupela , Piyush Gupta , Balaji Krishnamurthy

Large Language Models (LLMs) are a powerful tool for statistical text analysis, with derived sequences of next-token probability distributions offering a wealth of information. Extracting this signal typically relies on metrics such as…

Drug discovery aims at designing novel molecules with specific desired properties for clinical trials. Over past decades, drug discovery and development have been a costly and time consuming process. Driven by big chemical data and AI, deep…

Machine Learning · Computer Science 2020-07-22 Karan Yang , Chengxi Zang , Fei Wang

Given a large-scale graph with millions of nodes and edges, how to reveal macro patterns of interest, like cliques, bi-partite cores, stars, and chains? Furthermore, how to visualize such patterns altogether getting insights from the graph…

Social and Information Networks · Computer Science 2016-11-17 Hugo Gualdron , Robson Cordeiro , Jose Rodrigues

Effective data visualization is a key part of the discovery process in the era of big data. It is the bridge between the quantitative content of the data and human intuition, and thus an essential component of the scientific path from data…

Projection algorithms such as t-SNE or UMAP are useful for the visualization of high dimensional data, but depend on hyperparameters which must be tuned carefully. Unfortunately, iteratively recomputing projections to find the optimal…

Machine Learning · Computer Science 2021-06-28 Gabriel Appleby , Mateus Espadoto , Rui Chen , Samuel Goree , Alexandru Telea , Erik W Anderson , Remco Chang

Linear diagrams are an effective way to visualize set-based data by representing elements as columns and sets as rows with one or more horizontal line segments, whose vertical overlaps with other rows indicate set intersections and their…

Computational Geometry · Computer Science 2022-08-18 Alexander Dobler , Martin Nöllenburg

Mathematical expressions can be represented as a tree consisting of terminal symbols, such as identifiers or numbers (leaf nodes), and functions or operators (non-leaf nodes). Expression trees are an important mechanism for storing and…

Human-Computer Interaction · Computer Science 2018-04-16 Moritz Schubotz , Norman Meuschke , Thomas Hepp , Howard S. Cohl , Bela Gipp

The task of dimensionality reduction and visualization of high-dimensional datasets remains a challenging problem since long. Modern high-throughput technologies produce newer high-dimensional datasets having multiple views with relatively…

Human-Computer Interaction · Computer Science 2023-04-05 Chayan Maitra , Dibyendu B. Seal , Rajat K. De