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Dimensionality reduction is often used as an initial step in data exploration, either as preprocessing for classification or regression or for visualization. Most dimensionality reduction techniques to date are unsupervised; they do not…

Machine Learning · Statistics 2020-06-17 Jake S. Rhodes , Adele Cutler , Guy Wolf , Kevin R. Moon

Treemaps have been widely applied to the visualization of hierarchical data. A treemap takes a weighted tree and visualizes its leaves in a nested planar geometric shape, with sub-regions partitioned such that each sub-region has an area…

Graphics · Computer Science 2023-09-01 Mehdi Behroozi , Reyhaneh Mohammadi , Cody Dunne

Multivariate time series (MTS) have become increasingly common in healthcare domains where human vital signs and laboratory results are collected for predictive diagnosis. Recently, there have been increasing efforts to visualize healthcare…

Machine Learning · Computer Science 2017-08-29 Minh Nguyen , Sanjay Purushotham , Hien To , Cyrus Shahabi

We study the problem of visualizing large-scale and high-dimensional data in a low-dimensional (typically 2D or 3D) space. Much success has been reported recently by techniques that first compute a similarity structure of the data points…

Machine Learning · Computer Science 2016-04-06 Jian Tang , Jingzhou Liu , Ming Zhang , Qiaozhu Mei

Visualization of data is an important step in the understanding of data and the evaluation of statistical models. Topological Data Analysis Ball Mapper (TDABM) after Dlotko (2019), provides a model free means to visualize multivariate…

Methodology · Statistics 2025-05-14 Simon Rudkin

Running machine learning analytics over geographically distributed datasets is a rapidly arising problem in the world of data management policies ensuring privacy and data security. Visualizing high dimensional data using tools such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-13 Viska Wei , Nikita Ivkin , Vladimir Braverman , Alexander Szalay

Low-dimensional visualizations, or "projection maps," are widely used in scientific and creative domains to interpret large-scale and complex datasets. These visualizations not only aid in understanding existing knowledge spaces but also…

Artificial Intelligence · Computer Science 2025-05-16 Xingjian Zhang , Ziyang Xiong , Shixuan Liu , Yutong Xie , Tolga Ergen , Dongsub Shim , Hua Xu , Honglak Lee , Qiaozhu Me

UMAP is a non-parametric graph-based dimensionality reduction algorithm using applied Riemannian geometry and algebraic topology to find low-dimensional embeddings of structured data. The UMAP algorithm consists of two steps: (1) Compute a…

Machine Learning · Computer Science 2021-08-31 Tim Sainburg , Leland McInnes , Timothy Q Gentner

Dimensional data reduction methods are fundamental to explore and visualize large data sets. Basic requirements for unsupervised data exploration are simplicity, flexibility and scalability. However, current methods show complex…

Machine Learning · Computer Science 2021-12-03 Joan Garriga , Frederic Bartumeus

Human subject studies that map-like visualizations are as good or better than standard node-link representations of graphs, in terms of task performance, memorization and recall of the underlying data, and engagement [SSKB14, SSKB15]. With…

Computational Geometry · Computer Science 2019-12-10 Felice De Luca , Iqbal Hossain , Kathryn Gray , Stephen Kobourov , Katy Börner

Merge trees are a type of topological descriptors that record the connectivity among the sublevel sets of scalar fields. They are among the most widely used topological tools in visualization. In this paper, we are interested in sketching a…

Computational Geometry · Computer Science 2021-06-01 Mingzhe Li , Sourabh Palande , Lin Yan , Bei Wang

Understanding the response of an output variable to multi-dimensional inputs lies at the heart of many data exploration endeavours. Topology-based methods, in particular Morse theory and persistent homology, provide a useful framework for…

Graphics · Computer Science 2022-08-16 Yarden Livnat , Dan Maljovec , Attila Gyulassy , Dr Baptiste Mouginot , Valerio Pascucci

Mapper is an algorithm that summarizes the topological information contained in a dataset and provides an insightful visualization. It takes as input a point cloud which is possibly high-dimensional, a filter function on it and an open…

Algebraic Topology · Mathematics 2019-03-12 Bishal Deb , Ankita Sarkar , Nupur Kumari , Akash Rupela , Piyush Gupta , Balaji Krishnamurthy

We introduce "TriMap"; a dimensionality reduction technique based on triplet constraints, which preserves the global structure of the data better than the other commonly used methods such as t-SNE, LargeVis, and UMAP. To quantify the global…

Machine Learning · Computer Science 2022-03-29 Ehsan Amid , Manfred K. Warmuth

In this paper, we present Hi-D maps, a novel method for the visualization of multi-dimensional categorical data. Our work addresses the scarcity of techniques for visualizing a large number of data-dimensions in an effective and…

Graphics · Computer Science 2025-07-11 Radi Muhammad Reza , Benjamin A Watson

The clustering and visualisation of high-dimensional data is a ubiquitous task in modern data science. Popular techniques include nonlinear dimensionality reduction methods like t-SNE or UMAP. These methods face the `scale-problem' of…

Machine Learning · Statistics 2025-10-20 Jack Kendrick

Dimensionality reduction (DR) techniques help analysts to understand patterns in high-dimensional spaces. These techniques, often represented by scatter plots, are employed in diverse science domains and facilitate similarity analysis among…

Machine Learning · Computer Science 2025-10-21 Wilson E. Marcílio-Jr , Danilo M. Eler , Fernando V. Paulovich , Rafael M. Martins

Dimension reduction (DR) techniques such as t-SNE, UMAP, and TriMAP have demonstrated impressive visualization performance on many real world datasets. One tension that has always faced these methods is the trade-off between preservation of…

Machine Learning · Computer Science 2021-08-27 Yingfan Wang , Haiyang Huang , Cynthia Rudin , Yaron Shaposhnik

Interactive exploration of large, multidimensional datasets plays a very important role in various scientific fields. It makes it possible not only to identify important structural features and forms, such as clusters of vertices and their…

Machine Learning · Computer Science 2023-03-10 Bartosz Minch

This study introduces a new method of visualizing complex tree structured objects. The usefulness of this method is illustrated in the context of detecting unexpected features in a data set of very large trees. The major contribution is a…

Applications · Statistics 2012-02-14 Burcu Aydin , Gabor Pataki , Haonan Wang , Alim Ladha , Elizabeth Bullitt , J. S. Marron