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The current landscape of scientific research is widely based on modeling and simulation, typically with complexity in the simulation's flow of execution and parameterization properties. Execution flows are not necessarily straightforward…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-26 Eduardo Ponce , Brittany Stephenson , Suzanne Lenhart , Judy Day , Gregory D. Peterson

The Visual Physics Analysis (VISPA) project integrates different aspects of physics analyses into a graphical development environment. It addresses the typical development cycle of (re-)designing, executing and verifying an analysis. The…

Data Analysis, Statistics and Probability · Physics 2012-09-10 H. -P. Bretz , M. Brodski , M. Erdmann , R. Fischer , A. Hinzmann , T. Klimkovich , D. Klingebiel , M. Komm , J. Lingemann , G. Müller , T. Münzer , M. Rieger , J. Steggemann , T. Winchen

The SVOM Visible Telescope (VT) is critical for the rapid identification of gamma-ray burst (GRB) optical counterparts, particularly for high-redshift candidates that require immediate infrared spectroscopic follow-up. To address the…

PACKMOL is a widely utilized molecular modeling tool within the computational chemistry community. However, its perceivable advantages have been impeded by the long-standing lack of a robust open-source graphical user interface (GUI) that…

Chemical Physics · Physics 2024-08-26 Jian Huang , Chenchen Wu , Xiner Yang , Zaixing Yang , Shengtang Liu , Gang Yu

The current trend for domain-specific architectures (DSAs) has led to renewed interest in research test chips to demonstrate new specialized hardware. Tape-outs also offer huge pedagogical value garnered from real hands-on exposure to the…

Hardware Architecture · Computer Science 2020-05-27 Paul Whatmough , Marco Donato , Glenn Ko , Sae-Kyu Lee , David Brooks , Gu-Yeon Wei

Elasticity is one of the most fundamental mechanical properties of solid. In high-throughput design of advanced materials, there is an imperative demand for the capability to quickly calculate and screen a massive pool of candidate…

Materials Science · Physics 2022-10-05 Hao Wang , Y. C. Gan , Hua Y. Geng , Xiang-Rong Chen

We present iSLAT (the Interactive Spectral-Line Analysis Tool), a python-based graphical tool that allows users to interactively explore and manually fit line emission observed in molecular spectra. iSLAT adopts a simple slab model that…

Instrumentation and Methods for Astrophysics · Physics 2024-02-07 Evan Jellison , Matthew Johnson , Andrea Banzatti , Simon Bruderer

This paper presents the Userspace Integrity Measurement Toolkit (USIM Toolkit), a set of integrity measurement collection tools capable of detecting advanced malware threats, such as memory-only implants, that evade many traditional…

Cryptography and Security · Computer Science 2019-05-01 J. Aaron Pendergrass , Nathan Hull , John Clemens , Sarah Helble , Mark Thober , Kathleen McGill , Machon Gregory , Peter Loscocco

This research study is built upon cybersecurity audits and investigates the optimization of an Open Web Application Security Project (OWASP) Top 10 algorithm for Web Applications (WA) security audits using Vulnerability Assessment and…

Cryptography and Security · Computer Science 2023-11-20 Rui Ventura , Daniel Jose Franco , Omar Khasro Akram

We present a fully modular and scalable software pipeline for processing electron microscope (EM) images of brain slices into 3D visualization of individual neurons and demonstrate an end-to-end segmentation of a large EM volume using a…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-20 Rafael Vescovi , Hanyu Li , Jeffery Kinnison , Murat Keceli , Misha Salim , Narayanan Kasthuri , Thomas D. Uram , Nicola Ferrier

While machine-learned interatomic potentials (MLIPs) accelerate phonon dispersion calculations, merely identifying dynamical instabilities in computationally predicted materials is insufficient; automated pathways to resolve them are…

Materials Science · Physics 2026-05-01 Rogério Almeida Gouvêa , Gian-Marco Rignanese

We present PlanetPack, a new software tool that we developed to facilitate and standardize the advanced analysis of radial velocity (RV) data for the goal of exoplanets detection, characterization, and basic dynamical $N$-body simulations.…

Instrumentation and Methods for Astrophysics · Physics 2013-08-06 Roman V. Baluev

WebRISC-V is a web-based educational tool designed to simulate the pipelined execution of assembly programs according to the RV64IM specifications (64-bit RISC-V processor). The tool allows users to investigate pipeline stalls, understand…

Hardware Architecture · Computer Science 2025-04-08 Roberto Giorgi , Gianfranco Mariotti

In this paper, we present MASTISK (MAchine-learning and Synaptic-plasticity Technology Integrated Simulation frameworK). MASTISK is an open-source versatile and flexible tool developed in MATLAB for design exploration of dedicated…

Emerging Technologies · Computer Science 2018-04-04 Tinish Bhattacharya , Vivek Parmar , Manan Suri

We introduce SciWING, an open-source software toolkit which provides access to pre-trained models for scientific document processing tasks, inclusive of citation string parsing and logical structure recovery. SciWING enables researchers to…

Digital Libraries · Computer Science 2020-10-26 Abhinav Ramesh Kashyap , Min-Yen Kan

Mastering computational architectures is essential for developing fast and power-efficient programs. Our advanced simulator empowers both IT students and professionals to grasp the fundamentals of superscalar RISC-V processors, HW/SW…

Hardware Architecture · Computer Science 2024-11-13 Jiri Jaros , Michal Majer , Jakub Horky , Jan Vavra

As data science and machine learning methods are taking on an increasingly important role in the materials research community, there is a need for the development of machine learning software tools that are easy to use (even for nonexperts…

Computational Physics · Physics 2020-06-26 Ryan Jacobs , Tam Mayeshiba , Ben Afflerbach , Luke Miles , Max Williams , Matthew Turner , Raphael Finkel , Dane Morgan

Scientific codes are increasingly being used in compositional settings, especially problem solving environments (PSEs). Typical compositional modeling frameworks require significant buy-in, in the form of commitment to a particular style of…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Srinidhi Varadarajan , Joy Mukherjee , Naren Ramakrishnan

Advancements in theoretical and algorithmic approaches, workflow engines, and an ever-increasing computational power have enabled a novel paradigm for materials discovery through first-principles high-throughput simulations. A major…

Whole-slide image (WSI) preprocessing, comprising tissue detection followed by patch extraction, is foundational to AI-driven computational pathology but remains a major bottleneck for scaling to large and heterogeneous cohorts. We present…