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In this overview, we discuss the connections between the observations of critical dynamics in neuronal networks and the maximum entropy models that are often used as statistical models of neural activity, focusing in particular on the…
We consider a neural network with adapting synapses whose dynamics can be analitically computed. The model is made of $N$ neurons and each of them is connected to $K$ input neurons chosen at random in the network. The synapses are…
A central problem in systems neuroscience is to determine how an external stimulation is propagated through the brain so as to produce a reaction. Current deterministic and stochastic control models quantify transition costs between brain…
Turing instability in activator-inhibitor systems provides a paradigm of nonequilibrium pattern formation; it has been extensively investigated for biological and chemical processes. Turing pattern formation should furthermore be possible…
When a physical system is driven away from equilibrium, the statistical distribution of its dynamical trajectories informs many of its physical properties. Characterizing the nature of the distribution of dynamical observables, such as a…
We introduce the concept of a Markov influence system (MIS) and analyze its dynamics. An MIS models a random walk in a graph whose edges and transition probabilities change endogenously as a function of the current distribution. This…
We give a self-contained introduction to the theory of directed graphs, leading up to the relationship between the Perron-Frobenius eigenvectors of a graph and its autocatalytic sets. Then we discuss a particular dynamical system on a fixed…
Within animals, oxygen exchange occurs within networks containing potentially billions of microvessels that are distributed throughout the animal's body. Innovative imaging methods now allow for mapping of the architecture and blood flows…
One challenge of physics is to explain how collective properties arise from microscopic interactions. Indeed, interactions form the building blocks of almost all physical theories and are described by polynomial terms in the action. The…
Graph-based models form a fundamental aspect of data representation in Data Sciences and play a key role in modeling complex networked systems. In particular, recently there is an ever-increasing interest in modeling dynamic complex…
This work maps deep neural networks to classical Ising spin models, allowing them to be described using statistical thermodynamics. The density of states shows that structures emerge in the weights after they have been trained --…
Over the past two decades, an increasing array of control-theoretic methods have been used to study the brain as a complex dynamical system and better understand its structure-function relationship. This article provides an overview on one…
We study the mean-field limit and stationary distributions of a pulse-coupled network modeling the dynamics of a large neuronal assemblies. Our model takes into account explicitly the intrinsic randomness of firing times, contrasting with…
We study tensor network states defined on an underlying graph which is sparsely connected. Generic sparse graphs are expander graphs with a high probability, and one can represent volume law entangled states efficiently with only polynomial…
The Ising model on networks plays a fundamental role as a testing ground for understanding cooperative phenomena in complex systems. Here we solve the synchronous dynamics of the Ising model on random graphs with an arbitrary degree…
The Preisach model has been useful as a null-model for understanding memory formation in periodically driven disordered systems. In amorphous solids for example, the athermal response to shear is due to localized plastic events (soft…
Differential equations are a ubiquitous tool to study dynamics, ranging from physical systems to complex systems, where a large number of agents interact through a graph with non-trivial topological features. Data-driven approximations of…
The collective dynamics of interacting dynamical units on a network crucially depends on the properties of the network structure. Rather than considering large but finite graphs to capture the network, one often resorts to graph limits and…
In the context of network dynamics, the complexity of systems increases possible evolutionary paths that often are not deterministic. Occasionally, some map routs form over the course of time which guide systems towards some particular…
Non-equilibrium systems lack an explicit characterisation of their steady state like the Boltzmann distribution for equilibrium systems. This has drastic consequences for the inference of parameters of a model when its dynamics lacks…