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Brain connectivity networks, which characterize the functional or structural interaction of brain regions, has been widely used for brain disease classification. Kernel-based method, such as graph kernel (i.e., kernel defined on graphs),…

Machine Learning · Computer Science 2021-01-19 Kai Ma , Biao Jie , Daoqiang Zhang

The central nervous system is composed of many individual units -- from cells to areas -- that are connected with one another in a complex pattern of functional interactions that supports perception, action, and cognition. One natural and…

Neurons and Cognition · Quantitative Biology 2017-04-03 Ann E. Sizemore , Danielle S. Bassett

The brain is organized in a modular way, serving multiple functionalities. This multiplicity requires that both positive (e.g. excitatory, phase-coherent) and negative (e.g. inhibitory, phase-opposing) interactions take place across brain…

Neurons and Cognition · Quantitative Biology 2019-07-29 Assaf Almog , Ori Roethler , Renate Buijink , Stephan Michel , Johanna H Meijer , Jos H. T. Rohling , Diego Garlaschelli

Small-world structures are often used to describe structural connections in the brain. In this work, we compare the structural connection of cortical areas of a healthy brain and a brain affected by Alzheimer's disease with artificial…

Neurons and Cognition · Quantitative Biology 2020-04-22 José C. P. Coninck , Fabiano A. S. Ferrari , Adriane S. Reis , Kelly C. Iarosz , Antonio M. Batista , Ricardo L. Viana

The introduction of graph theory in neuroimaging has pro- vided invaluable tools for the study of brain connectivity. These methods require the definition of a graph, which is typically derived by estimating the effective connectivity…

Methodology · Statistics 2016-12-19 Nicolas Honnorat , Christos Davatzikos

Learning graphs from sets of nodal observations represents a prominent problem formally known as graph topology inference. However, current approaches are limited by typically focusing on inferring single networks, and they assume that…

Social and Information Networks · Computer Science 2021-11-17 Samuel Rey , Andrei Buciulea , Madeline Navarro , Santiago Segarra , Antonio G. Marques

Traditional voxel-level multiple testing procedures in neuroimaging, mostly $p$-value based, often ignore the spatial correlations among neighboring voxels and thus suffer from substantial loss of power. We extend the…

Applications · Statistics 2016-07-29 Hai Shu , Bin Nan , Robert Koeppe

In the past decade, the cell-type specific connectivity and activity of local cortical networks have been characterized experimentally to some detail. In parallel, modeling has been established as a tool to relate network structure to…

Neurons and Cognition · Quantitative Biology 2011-06-29 Tobias C. Potjans , Markus Diesmann

Graph deep learning models, a class of AI-driven approaches employing a message aggregation mechanism, have gained popularity for analyzing the functional brain connectome in neuroimaging. However, their actual effectiveness remains…

Neural and Evolutionary Computing · Computer Science 2026-02-10 Keqi Han , Yao Su , Lifang He , Liang Zhan , Sergey Plis , Vince Calhoun , Carl Yang

Measures of association between cortical regions based on activity signals provide useful information for studying brain functional connectivity. Difficulties occur with signals of electric neuronal activity, where an observed signal is a…

Methodology · Statistics 2024-01-09 Roberto D. Pascual-Marqui , Kieko Kochi , Toshihiko Kinoshita

Multimodal brain networks characterize complex connectivities among different brain regions from both structural and functional aspects and provide a new means for mental disease analysis. Recently, Graph Neural Networks (GNNs) have become…

Neurons and Cognition · Quantitative Biology 2022-05-25 Yanqiao Zhu , Hejie Cui , Lifang He , Lichao Sun , Carl Yang

Explaining neural network models is important for increasing their trustworthiness in real-world applications. Most existing methods generate post-hoc explanations for neural network models by identifying individual feature attributions or…

Computation and Language · Computer Science 2021-04-14 Hanjie Chen , Song Feng , Jatin Ganhotra , Hui Wan , Chulaka Gunasekara , Sachindra Joshi , Yangfeng Ji

A wide range of tasks in network analysis, such as clustering network populations or identifying anomalies in temporal graph streams, require a measure of the similarity between two graphs. To provide a meaningful data summary for…

Physics and Society · Physics 2024-10-15 Helcio Felippe , Federico Battiston , Alec Kirkley

In this paper, we develop a graphical modeling framework for the inference of networks across multiple sample groups and data types. In medical studies, this setting arises whenever a set of subjects, which may be heterogeneous due to…

Recently, there has been increased interest in fusing multimodal imaging to better understand brain organization. Specifically, accounting for knowledge of anatomical pathways connecting brain regions should lead to desirable outcomes such…

Applications · Statistics 2018-03-02 Ixavier A. Higgins , Suprateek Kundu , Ying Guo

The recent developments and growing interest in neural-symbolic models has shown that hybrid approaches can offer richer models for Artificial Intelligence. The integration of effective relational learning and reasoning methods is one of…

Machine Learning · Computer Science 2020-05-07 Henrique Lemos , Pedro Avelar , Marcelo Prates , Luís Lamb , Artur Garcez

Using graphs to model irregular information domains is an effective approach to deal with some of the intricacies of contemporary (network) data. A key aspect is how the data, represented as graph signals, depend on the topology of the…

Signal Processing · Electrical Eng. & Systems 2023-05-02 Fernando J. Iglesias Garcia , Santiago Segarra , Antonio G. Marques

Graph models, like other machine learning models, have implicit and explicit biases built-in, which often impact performance in nontrivial ways. The model's faithfulness is often measured by comparing the newly generated graph against the…

Social and Information Networks · Computer Science 2023-01-06 Satyaki Sikdar , Daniel Gonzalez Cedre , Trenton W. Ford , Tim Weninger

Graphs are nowadays ubiquitous in the fields of signal processing and machine learning. As a tool used to express relationships between objects, graphs can be deployed to various ends: I) clustering of vertices, II) semi-supervised…

Machine Learning · Computer Science 2020-07-17 Carlos Lassance , Vincent Gripon , Gonzalo Mateos

A popular theory of perceptual processing holds that the brain learns both a generative model of the world and a paired recognition model using variational Bayesian inference. Most hypotheses of how the brain might learn these models assume…

Neurons and Cognition · Quantitative Biology 2021-06-01 Ari S. Benjamin , Konrad P. Kording