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Evolutionary dynamics is often viewed as a subtle process of change accumulation that causes a divergence among organisms and their genomes. However, this interpretation is an inheritance of a gradualistic view that has been challenged at…

Populations and Evolution · Quantitative Biology 2018-07-27 Jacobo Aguirre , Pablo Catalán , José A. Cuesta , Susanna Manrubia

The process of desertification in the semi-arid climatic zone is considered by many as a catastrophic regime shift, since the positive feedback of vegetation density on growth rates yields a system that admits alternative steady states.…

Populations and Evolution · Quantitative Biology 2018-02-07 Haim Weissmann , Rafi Kent , Yaron Michael , Nadav M. Shnerb

From the smallest biological systems to the largest cosmological structures, spatial domains undergo expansion and contraction. Within these growing domains, diffusive transport is a common phenomenon. Mathematical models have been widely…

Populations and Evolution · Quantitative Biology 2023-06-27 Stuart T. Johnston , Matthew J. Simpson

A fundamental task in developmental biology is to identify the mechanisms which drive morphogenesis. In many cases, pattern formation is driven by the positional information determined by both the gradient of maternal factors and hard-wired…

Molecular Networks · Quantitative Biology 2007-05-23 L. Diambra , Luciano da Fontoura Costa

This chapter is about Complexity and Spatial Dynamics in Urban Systems. Strong inequalities in the size of cities and the apparent difficulty of limiting their growth raise practical issues for spatial planning. At a time when new…

Physics and Society · Physics 2020-10-29 Juste Raimbault , Denise Pumain

Urban streets patterns form planar networks whose empirical properties cannot be accounted for by simple models such as regular grids or Voronoi tesselations. Striking statistical regularities across different cities have been recently…

Physics and Society · Physics 2009-11-13 Marc Barthelemy , Alessandro Flammini

In sustained growth with random dynamics stationary distributions can exist without detailed balance. This suggests thermodynamical behavior in fast growing complex systems. In order to model such phenomena we apply both a discrete and a…

Statistical Mechanics · Physics 2017-03-22 Tamás Biró , Zoltán Néda

The capability of cells to form surface extensions to non-locally probe the surrounding environment plays a key role in cell migration. The existing mathematical models for migration of cell populations driven by this non-local form of…

Cell Behavior · Quantitative Biology 2025-12-24 Tommaso Lorenzi , Nadia Loy , Chiara Villa

Understanding biological phenomena requires a systemic approach that incorporates different mechanisms acting on different spatial and temporal scales, since in organisms the workings of all components, such as organelles, cells, and organs…

Tissues and Organs · Quantitative Biology 2015-09-14 Yuri K. Shestopaloff , Ivo F. Sbalzarini

In the past many papers have appeared which simulated surface growth with different growth models. The results showed that, if models differed only slightly in their `growth' rules, the resulting surfaces may belong to different…

Computational Physics · Physics 2009-10-31 W. E. Hagston , H. Ketterl

The characterisation of the spatial and temporal distribution of the root system in a cultivated field depends on the soil volume occupied by the root systems (the scatter), and the local intensity of the root colonisation in the field (the…

Applications · Statistics 2020-11-03 Jeanett S. Pelck , Rodrigo Labouriau

We consider stochastic growth models for populations organized in colonies and subject to uniform catastrophes. To assess population viability, we analyze scenarios in which individuals adopt dispersion strategies after catastrophic events.…

Probability · Mathematics 2026-02-09 Joan Amaya , Valdivino V. Junior , Fábio P. Machado , Alejandro Roldán-Correa

In large clonal populations, several clones generally compete which results in complex evolutionary and ecological dynamics: experiments show successive selective sweeps of favorable mutations as well as long-term coexistence of multiple…

Populations and Evolution · Quantitative Biology 2019-03-29 Sylvain Billiard , Charline Smadi

We study the influence of the bulk dynamics of a growing cluster of particles on the properties of its interface. First, we define a {\it general bulk growth model} by means of a continuum Master equation for the evolution of the bulk…

Statistical Mechanics · Physics 2009-10-31 Cristobal Lopez , Pedro L. Garrido , Francisco de los Santos

Quantifying the spatial organization of human settlements is fundamental to understanding the complexity of urban systems. However, the quantitative patterns of the distribution of villages, towns, and cities that lie between random and…

Physics and Society · Physics 2023-07-06 Lei Dong

Seagrass meadows are among the most important coastal ecosystems, in terms of both spatial extent and ecosystem services, but they are also declining worldwide. Understanding the drivers of seagrass meadow dynamics is essential for…

Populations and Evolution · Quantitative Biology 2019-11-07 Sophie Arnaud-Haond , Solenn Stoeckel , Diane Bailleul

Different classes of phenomenological universalities of environment dependent growths have been proposed. The logistic as well as environment dependent West-type allometry based biological growth can be explained in this proposed framework…

Chaotic Dynamics · Physics 2014-12-23 Dibyendu Biswas , Swarup Poria

We study optimal two-sector (vegetative and reproductive) allocation models of annual plants in temporally variable environments, that incorporate effects of density dependent lifetime variability and juvenile mortality in a fitness…

Populations and Evolution · Quantitative Biology 2022-06-24 Sergiy Koshkin , Zachary Zalles , Michael F. Tobin , Nicolas Toumbacaris , Cameron Spiess

Shape is one of the important characteristics for the structures observed in living organisms. Whereas biologists have proposed models where the shape is controlled on a molecular level [1], physicists, following Turing [2] and d'Arcy…

Tissues and Organs · Quantitative Biology 2010-10-11 Etienne Couturier , Sylvain Courrech du Pont , Stephane Douady

Comprehensive models of stochastic, clonally reproducing populations are defined in terms of general branching processes, allowing birth during maternal life, as for higher organisms, or by splitting, as in cell division. The populations…

Populations and Evolution · Quantitative Biology 2014-10-14 Kais Hamza , Peter Jagers , Fima C. Klebaner