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Regular vegetation patterns in semiarid ecosystems are believed to arise from the interplay between long-range competition and facilitation processes acting at smaller distances. We show that, under rather general conditions, long-range…

Populations and Evolution · Quantitative Biology 2014-07-24 Ricardo Martinez-Garcia , Justin M. Calabrese , Emilio Hernandez-Garcia , Cristobal Lopez

A simplified model of clonal plant growth is formulated, motivated by observations of spatial structures in Posidonia oceanica meadows in the Mediterranean Sea. Two levels of approximation are considered for the scale-dependent feedback…

Pattern Formation and Solitons · Physics 2020-09-18 Daniel Ruiz-Reynes , Luis Martin , Emilio Hernandez-Garcia , Edgar Knobloch , Damia Gomila

We propose here to interpret and model peculiar plant morphologies (cushions, tussocks) observed in the Andean altiplano as localized structures. Such structures resulting in a patchy, aperiodic aspect of the vegetation cover are…

Pattern Formation and Solitons · Physics 2015-06-22 P. Couteron , F. Anthelme , M. Clerc , D. Escaff , C. Fernandez-Oto , M. Tlidi

Patches of vegetation consist of dense clusters of shrubs, grass, or trees, often found to be circular characteristic size, defined by the properties of the vegetation and terrain. Therefore, vegetation patches can be interpreted as…

Pattern Formation and Solitons · Physics 2017-11-29 Mustapha Tlidi , Ignacio Bordeu , Marcel G. Clerc , Daniel Escaff

We build networks of genetic similarity in which the nodes are organisms sampled from biological populations. The procedure is illustrated by constructing networks from genetic data of a marine clonal plant. An important feature in the…

Populations and Evolution · Quantitative Biology 2008-01-23 E. Hernandez-Garcia , A. F. Rozenfeld , V. M. Eguiluz , S. Arnaud-Haond , C. M. Duarte

We model evolution of plants in a world, made up of different locations, with multiple environments (mutually exclusive and collectively exhaustive subsets of locations). Each environment (landmass) has temperature, rainfall, and other…

Populations and Evolution · Quantitative Biology 2019-05-27 Alexander , Khazatsky , Albert Yu , Zihao Zhao , Gabe Zuckerman

A new model for biological growth is introduced that couples the geometry of an organism (or part of the organism) to the flow and deposition of material. The model has three dynamical variables (a) a Riemann metric tensor for the geometry,…

Biological Physics · Physics 2010-10-05 Julia Pulwicki , David Hobill

Rhizomes play fundamental roles in plant evolution, persistence, and environmental adaptation by enabling clonal propagation, resource storage, and stress resilience. Despite their ecological and agronomic importance across diverse plant…

Populations and Evolution · Quantitative Biology 2026-01-19 Hongfei Chen , Jenn M. Coughlan

The savanna biome is characterised by a continuous vegetation cover, comprised of herbaceous and woody plants. The coexistence of species in arid savannas, where water availability is the main limiting resource for plant growth, provides an…

Populations and Evolution · Quantitative Biology 2019-11-26 Lukas Eigentler , Jonathan A Sherratt

Accurate predictions and representations of plant growth patterns in simulated and controlled environments are important for addressing various challenges in plant phenomics research. This review explores various works on state-of-the-art…

Quantitative Methods · Quantitative Biology 2025-07-17 Mohamed Debbagh , Shangpeng Sun , Mark Lefsrud

Spatial models where growth is limited to the edge of the expansions have been instrumental to understand the population dynamics and the clone size distribution in growing cellular populations, such as microbial colonies and avascular…

Populations and Evolution · Quantitative Biology 2022-06-08 Armin Eghdami , Jayson Paulose , Diana Fusco

In species reproducing both sexually and asexually clones are often more common in recently established populations. Earlier studies have suggested that this pattern arises from natural selection favouring asexual recruitment in young…

Populations and Evolution · Quantitative Biology 2017-12-06 M. Rafajlovic , D. Kleinhans , C. Gulliksson , J. Fries , D. Johansson , A. Ardehed , L. Sundqvist , R. T. Pereyra , B. Mehlig , P. R. Jonsson , K. Johannesson

The minimal ecological requirements for formation of regular vegetation patterns in semiarid systems have been recently questioned. Against the general belief that a combination of facilitative and competitive interactions is necessary,…

Populations and Evolution · Quantitative Biology 2014-09-24 Ricardo Martinez-Garcia , Justin M. Calabrese , E. Hernandez-Garcia , C. Lopez

This paper concerns the long term behaviour of a growth model describing a random sequential allocation of particles on a finite cycle graph. The model can be regarded as a reinforced urn model with graph-based interactions. It is motivated…

Probability · Mathematics 2018-05-23 Marcelo Costa , Mikhail Menshikov , Vadim Shcherbakov , Marina Vachkovskaia

The emergence of complex organs is driven by the coordinated proliferation, migration and differentiation of precursor cells. The fate behaviour of these cells is reflected in the time evolution their progeny, termed clones, which serve as…

A plant growth simulation can be characterized as a reconstructed visual representation of a plant or plant system. The phenotypic characteristics and plant structures are controlled by the scene environment and other contextual attributes.…

Computer Vision and Pattern Recognition · Computer Science 2024-09-23 Mohamed Debbagh , Yixue Liu , Zhouzhou Zheng , Xintong Jiang , Shangpeng Sun , Mark Lefsrud

Mutualisms are key for structuring ecological communities, but they are sensitive to environmental change and fluctuations in population size. Consequently, how mutualisms achieve stability remains an open question in ecological theory.…

Populations and Evolution · Quantitative Biology 2026-05-08 Matheus Bongestab , David Pinto-Ramos , Ricardo Martinez-Garcia

Continuum models for the spatial dynamics of growing cell populations have been widely used to investigate the mechanisms underpinning tissue development and tumour invasion. These models consist of nonlinear partial differential equations…

Tissues and Organs · Quantitative Biology 2019-07-15 Mark AJ Chaplain , Tommaso Lorenzi , Fiona R Macfarlane

Dry-land ecosystem has turned into a matter of grave concern, due to growing threat of land degradation and bioproductivity-loss. Self-organized vegetation patterns are a remarkable characteristic of these ecosystems; apart from being…

Populations and Evolution · Quantitative Biology 2022-09-27 Mrinal Kanti Pal , Swarup Poria

The self-organization of cells into complex tissues relies on a tight coordination of cell behavior. Identifying the cellular processes driving tissue growth is key to understanding the emergence of tissue forms and devising targeted…

Quantitative Methods · Quantitative Biology 2024-03-27 Ruslan Mukhamadiarov , Matteo Ciarchi , Fabrizio Olmeda , Steffen Rulands
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