Related papers: Supertrees
We provide an $\Omega(n\log n) $ lower bound and an $O(n^2)$ upper bound for the smallest size of rooted binary trees (a.k.a. phylogenetic tree shapes), which are universal for rooted binary trees with $n$ leaves, i.e., contain all of them…
An old open problem in graph drawing asks for the size of a universal point set, a set of points that can be used as vertices for straight-line drawings of all n-vertex planar graphs. We connect this problem to the theory of permutation…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
We survey permutation-based methods for approximate k-nearest neighbor search. In these methods, every data point is represented by a ranked list of pivots sorted by the distance to this point. Such ranked lists are called permutations. The…
A vertex subset of a graph is called a distance-$k$ independent set if the distance between any two of its distinct vertices is at least $k + 1$. For all $n,k \geq 1$, we determine the minimum possible number of inclusion-wise maximal…
We show that the expected size of the maximum agreement subtree of two $n$-leaf trees, uniformly random among all trees with the shape, is $\Theta(\sqrt{n})$. To derive the lower bound, we prove a global structural result on a decomposition…
A permutation is $k$-coverable if it can be partitioned into $k$ monotone subsequences. Barber conjectured that, for any given permutation, if every subsequence of length $k+2 \choose 2$ is $k$-coverable then the permutation itself is…
A sample of n generic points in the xy-plane defines a permutation that relates their ranks along the two axes. Every subset of k points similarly defines a pattern, which occurs in that permutation. The number of occurrences of small…
We study the packing dimension of unions of subsets of $k$-planes in $\mathbb{R}^n$ using tools from algorithmic information theory, obtaining an analog of a result of H\'era and a mild generalization of a recent result of Fraser. Along the…
We prove that it is decidable if a finitely based permutation class contains infinitely many simple permutations, and establish an unavoidable substructure result for simple permutations: every sufficiently long simple permutation contains…
A permutation is called Grassmannian if it has at most one descent. In this paper, we investigate pattern avoidance and parity restrictions for such permutations. As our main result, we derive formulas for the enumeration of Grassmannian…
A connected and acyclic hypergraph is called a supertree. In this paper we mainly focus on the spectral radii of uniform supertrees. Li, Shao and Qi determined the first two $k$-uniform supertrees with large spectral radii among all the…
Let $G=(V,E)$ be a simple, unweighted, connected graph. Let $d(u,v)$ denote the distance between vertices $u,v$. A resolving set of $G$ is a subset $S$ of $V$ such that knowing the distance from a vertex $v$ to every vertex in $S$ uniquely…
In this paper, we investigate the structures of an extremal tree which has the minimal number of subtrees in the set of all trees with the given degree sequence of a tree. In particular, the extremal trees must be caterpillar and but in…
This paper is part of the ongoing effort to study high-dimensional permutations. We prove the analogue to the Erd\H{o}s-Szekeres theorem: For every $k\ge1$, every order-$n$ $k$-dimensional permutation contains a monotone subsequence of…
Over some types of trees with a given number of vertices, which trees minimize or maximize the total number of subtrees or leaf containing subtrees are studied. Here are some of the main results:\ (1)\, Sharp upper bound on the total number…
The theory of limits of permutations leads to limit objects called permutons, which are certain Borel measures on the unit square. We prove that permutons avoiding a given permutation of order $k$ have a particularly simple structure.…
The concept of $k$-compatibility measures how many phylogenetic trees it would take to display all splits in a given set. A set of trees that display every single possible split is termed a \textit{universal tree set}. In this note, we find…
Every k entries in a permutation can have one of k! different relative orders, called patterns. How many times does each pattern occur in a large random permutation of size n? The distribution of this k!-dimensional vector of pattern…
Let T_k^m={\sigma \in S_k | \sigma_1=m}. We prove that the number of permutations which avoid all patterns in T_k^m equals (k-2)!(k-1)^{n+1-k} for k <= n. We then prove that for any \tau in T_k^1 (or any \tau in T_k^k), the number of…