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N-body simulations and trajectory analysis rely on the calculation of attributes that depend on pairwise particle distances within a cutoff. Interparticle potential energies, forces, distribution functions, neighbor lists, and…

Computational Physics · Physics 2022-06-22 Leandro Martínez

We present JDLL, an agile Java library that offers a comprehensive toolset/API to unify the development of high-end applications of DL for bioimage analysis and to streamline their installation and maintenance. JDLL provides all the…

We present JuliaReach, a toolbox for set-based reachability analysis of dynamical systems. JuliaReach consists of two main packages: Reachability, containing implementations of reachability algorithms for continuous and hybrid systems, and…

Systems and Control · Electrical Eng. & Systems 2024-12-20 Sergiy Bogomolov , Marcelo Forets , Goran Frehse , Kostiantyn Potomkin , Christian Schilling

Combustion kinetic modeling is an integral part of combustion simulation, and extensive studies have been devoted to developing both high fidelity and computationally affordable models. Despite these efforts, modeling combustion kinetics is…

This is a demonstration of the PNLSS Toolbox 1.0. The toolbox is designed to identify polynomial nonlinear state-space models from data. Nonlinear state-space models can describe a wide range of nonlinear systems. An illustration is…

Systems and Control · Electrical Eng. & Systems 2021-05-19 Jan Decuyper , Koen Tiels , Johan Schoukens

Hierarchical optimization architectures are used in power systems to manage disturbances and phenomena that arise at multiple spatial and temporal scales. We present a graph modeling abstraction for representing such architectures and an…

Optimization and Control · Mathematics 2023-09-20 David L. Cole , Harsha Gangammanavar , Victor M. Zavala

We introduce Gradus.jl, an open-source and publicly available general relativistic ray-tracing toolkit for spectral modelling in arbitrary spacetimes. Our software is written in the Julia programming language, making use of forward-mode…

High Energy Astrophysical Phenomena · Physics 2025-10-20 Fergus J. E. Baker , Andrew J. Young

Within the field of complicated multivariate time series forecasting (TSF), popular techniques frequently rely on intricate deep learning architectures, ranging from transformer-based designs to recurrent neural networks. However, recent…

Machine Learning · Computer Science 2023-12-25 Aiyinsi Zuo , Haixi Zhang , Zirui Li , Ce Zheng

This year marks the consolidation of Julia (https://julialang.org/), a programming language designed for scientific computing, as the first stable version (1.0) has been released, in August 2018. Among its main features, expressiveness and…

Instrumentation and Methods for Astrophysics · Physics 2018-12-05 Maurizio Tomasi , Mosè Giordano

Julia is a mature general-purpose programming language, with a large ecosystem of libraries and more than 12000 third-party packages, which specifically targets scientific computing. As a language, Julia is as dynamic, interactive, and…

Dynamic linear models (DLM) offer a very generic framework to analyse time series data. Many classical time series models can be formulated as DLMs, including ARMA models and standard multiple linear regression models. The models can be…

Methodology · Statistics 2019-08-20 Marko Laine

Real-world complex networks are usually being modeled as graphs. The concept of graphs assumes that the relations within the network are binary (for instance, between pairs of nodes); however, this is not always true for many real-life…

Social and Information Networks · Computer Science 2020-05-06 Alessia Antelmi , Gennaro Cordasco , Bogumił Kamiński , Paweł Prałat , Vittorio Scarano , Carmine Spagnuolo , Przemyslaw Szufel

SymBoltz is a new Julia package for solving the linear Einstein-Boltzmann equations in cosmology. It features a symbolic-numeric interface for specifying equations, is free of approximation switching schemes, and is compatible with…

Cosmology and Nongalactic Astrophysics · Physics 2026-03-11 Herman Sletmoen

IDEAL (Influence Diagram Evaluation and Analysis in Lisp) is a software environment for creation and evaluation of belief networks and influence diagrams. IDEAL is primarily a research tool and provides an implementation of many of the…

Artificial Intelligence · Computer Science 2013-04-05 Sampath Srinivas , John S. Breese

Satisfiability modulo theories (SMT) is a core tool in formal verification. While the SMT-LIB specification language can be used to interact with theorem proving software, a high-level interface allows for faster and easier specifications…

Logic in Computer Science · Computer Science 2024-12-05 Emiko Soroka , Mykel J. Kochenderfer , Sanjay Lall

Connectivity across landscapes influences a wide range of conservation-relevant ecological processes, including species movements, gene flow, and the spread of wildfire, pests, and diseases. Recent improvements in remote sensing data…

Quantitative Methods · Quantitative Biology 2019-06-11 Ranjan Anantharaman , Kimberly Hall , Viral Shah , Alan Edelman

JuMP is an open-source modeling language that allows users to express a wide range of optimization problems (linear, mixed-integer, quadratic, conic-quadratic, semidefinite, and nonlinear) in a high-level, algebraic syntax. JuMP takes…

Optimization and Control · Mathematics 2017-05-08 Iain Dunning , Joey Huchette , Miles Lubin

Many very large-scale systems are networks of cyber-physical systems in which humans and autonomous software agents cooperate. To make the cooperation safe for the humans involved, the systems have to follow protocols with rigid real-time…

Software Engineering · Computer Science 2024-10-21 Heinz Schmidt , Peter Herrmann , Maria Spichkova , James Harland , Ian Peake , Ergys Puka

nimble is an R package for constructing algorithms and conducting inference on hierarchical models. The nimble package provides a unique combination of flexible model specification and the ability to program model-generic algorithms.…

This paper presents a concept for a software system called RAIL representing industrial indoor environments in a dynamic spatial model, aimed at easing development and provision of location-based services. RAIL integrates data from…

Robotics · Computer Science 2021-12-23 Arne Wendt , Michael Brand , Thorsten Schüppstuhl
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