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Related papers: StateSpaceModels.jl: a Julia Package for Time-Seri…

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Machine Learning (ML) and Deep Learning (DL) innovations are being introduced at such a rapid pace that researchers are hard-pressed to analyze and study them. The complicated procedures for evaluating innovations, along with the lack of…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-02-20 Abdul Dakkak , Cheng Li , Jinjun Xiong , Wen-mei Hwu

A World Wide Web interface to a Monte Carlo validation and tuning facility is described. The aim of the package is to allow rapid and reproducible comparisons to be made between detailed measurements at high-energy physics colliders and…

High Energy Physics - Phenomenology · Physics 2009-11-07 J. M. Butterworth , S. Butterworth

State-space models (SSMs) are a highly expressive model class for learning patterns in time series data and for system identification. Deterministic versions of SSMs (e.g. LSTMs) proved extremely successful in modeling complex time series…

Increasing emphasis on data and quantitative methods in the biomedical sciences is making biological research more computational. Collecting, curating, processing, and analysing large genomic and imaging data sets poses major computational…

Quantitative Methods · Quantitative Biology 2021-09-22 Elisabeth Roesch , Joe G. Greener , Adam L. MacLean , Huda Nassar , Christopher Rackauckas , Timothy E. Holy , Michael P. H. Stumpf

We present MoonLight, a tool for monitoring temporal and spatio-temporal properties of mobile and spatially distributed cyber-physical systems (CPS). In the proposed framework, space is represented as a weighted graph, describing the…

Logic in Computer Science · Computer Science 2021-05-17 Ezio Bartocci , Luca Bortolussi , Michele Loreti , Laura Nenzi , Simone Silvetti

Time-series forecasting is central to many scientific and industrial domains, such as energy systems, climate modeling, finance, and retail. While forecasting methods have evolved from classical statistical models to automated, and neural…

This paper studies sequence modeling for prediction tasks with long range dependencies. We propose a new formulation for state space models (SSMs) based on learning linear dynamical systems with the spectral filtering algorithm (Hazan et…

Machine Learning · Computer Science 2024-07-12 Naman Agarwal , Daniel Suo , Xinyi Chen , Elad Hazan

This chapter provides a brief introduction to the theory and practice of spatial stochastic simulations. It begins with an overview of different methods available for biochemical simulations highlighting their strengths and limitations.…

Quantitative Methods · Quantitative Biology 2018-10-02 Sanjana Gupta , Jacob Czech , Robert Kuczewski , Thomas M. Bartol , Terrence J. Sejnowski , Robin E. C. Lee , James R. Faeder

An R package SpatialPack that implements routines to compute point estimators and perform hypothesis testing of the spatial association between two stochastic sequences is introduced. These methods address the spatial association between…

Applications · Statistics 2016-11-17 Felipe Osorio , Ronny Vallejos , Francisco Cuevas

We present LightCurveLynx, a flexible and extensible software framework for end-to-end forward modeling time-domain light curves. Given the growing need for realistic simulations in the time-domain astronomy community, LightCurveLynx is…

Instrumentation and Methods for Astrophysics · Physics 2026-04-09 Mi Dai , Jeremy Kubica , Konstantin Malanchev , Alex I. Malz , Olivia Lynn , Andrew Connolly , Rachel Mandelbaum , W. M. Wood-Vasey

In many safety-critical engineering domains, hazard analysis techniques are an essential part of requirement elicitation. Of the methods proposed for this task, STPA (System-Theoretic Process Analysis) represents a relatively recent…

Software Engineering · Computer Science 2025-03-18 Ali Raeisdanaei , Juho Kim , Michael Liao , Sparsh Kochhar

Statechart is a visual modelling language for systems. In this paper, we extend our earlier work on modular statecharts with local variables and present an updated operational semantics for statecharts with concurrency. Our variant of the…

Software Engineering · Computer Science 2023-07-12 Karthika Venkatesan , Sujit Kumar Chakrabarti

We introduce Merlion, an open-source machine learning library for time series. It features a unified interface for many commonly used models and datasets for anomaly detection and forecasting on both univariate and multivariate time series,…

The Statistical Toolkit is an open source system specialized in the statistical comparison of distributions. It addresses requirements common to different experimental domains, such as simulation validation (e.g. comparison of experimental…

Computational Physics · Physics 2015-06-11 M Batic , A. M. Paganoni , A. Pfeiffer , M. G. Pia , A. Ribon

Forecast reconciliation has become key to improving the accuracy and coherence of forecasts for linearly constrained multiple time series, such as hierarchical and grouped series. Yet, comprehensive software that jointly covers…

Computation · Statistics 2026-05-01 Daniele Girolimetto , Jeroen Rombouts , Ines Wilms , Yangzhuoran Fin Yang

We introduce ClimateMachine, a new open-source atmosphere modeling framework using the Julia language to be performance portable on central processing units (CPUs) and graphics processing units (GPUs). ClimateMachine uses a common framework…

Geographic Information Systems (GIS) and related technologies have generated substantial interest among statisticians with regard to scalable methodologies for analyzing large spatial datasets. A variety of scalable spatial process models…

Machine Learning · Statistics 2021-09-10 Sudipto Banerjee

Technical computing is a challenging application area for programming languages to address. This is evinced by the unusually large number of specialized languages in the area (e.g. MATLAB, R), and the complexity of common software stacks,…

Programming Languages · Computer Science 2018-08-13 Jeff Bezanson , Jake Bolewski , Jiahao Chen

Spatial statistics is a growing discipline providing important analytical techniques in a wide range of disciplines in the natural and social sciences. In the R package GWmodel, we introduce techniques from a particular branch of spatial…

Applications · Statistics 2014-03-18 Isabella Gollini , Binbin Lu , Martin Charlton , Christopher Brunsdon , Paul Harris

The stopp R package deals with spatio-temporal point processes which might have occurred on the Euclidean space or on some specific linear networks such as roads of a city. The package contains functions to summarize, plot, and perform…

Methodology · Statistics 2023-02-28 Nicoletta D'Angelo , Giada Adelfio
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