English
Related papers

Related papers: Testing Multispecies Coalescent Simulators using S…

200 papers

Many fields of science rely on software systems to answer different research questions. For valid results researchers need to trust the results scientific software produces, and consequently quality assurance is of utmost importance. In…

Software Engineering · Computer Science 2019-06-24 Thomas Vogel , Stephan Druskat , Markus Scheidgen , Claudia Draxl , Lars Grunske

The traditional activity of model selection aims at discovering a single model superior to other candidate models. In the presence of pronounced noise, however, multiple models are often found to explain the same data equally well. To…

Methodology · Statistics 2017-09-14 Chao Zheng , Davide Ferrari , Yuhong Yang

Simulation studies are used to evaluate and compare the properties of statistical methods in controlled experimental settings. In most cases, performing a simulation study requires knowledge of the true value of the parameter, or estimand,…

Methodology · Statistics 2025-03-04 Ashley I. Naimi , David Benkeser , Jacqueline E. Rudolph

Stochastic branching processes are a classical model for describing random trees, which have applications in numerous fields including biology, physics, and natural language processing. In particular, they have recently been proposed to…

Logic in Computer Science · Computer Science 2012-06-07 Taolue Chen , Klaus Dräger , Stefan Kiefer

Evaluating consistency in large language models (LLMs) is crucial for ensuring reliability, particularly in complex, multi-step interactions between humans and LLMs. Traditional self-consistency methods often miss subtle semantic changes in…

Artificial Intelligence · Computer Science 2025-06-18 Zhaochen Hong , Haofei Yu , Jiaxuan You

The development and generation of synthetic data are becoming increasingly vital in the field of statistical disclosure control. The PSInference package provides tools to perform exact inferential analysis on singly imputed synthetic data…

Methodology · Statistics 2025-03-20 Ricardo Moura , Mina Norouzirad , Vitor Augusto , Miguel Fonseca

In this paper, we analyze the behavior of the multivariate symmetric uncertainty (MSU) measure through the use of statistical simulation techniques under various mixes of informative and non-informative randomly generated features.…

Machine Learning · Computer Science 2023-06-29 Gustavo Sosa-Cabrera , Miguel García-Torres , Santiago Gómez , Christian Schaerer , Federico Divina

Search-based software testing (SBST) of Simulink models helps find scenarios that demonstrate that the system can reach a state that violates one of its requirements. However, many SBST techniques for Simulink models rely on requirements…

Software Engineering · Computer Science 2025-09-08 Federico Formica , Chris George , Shayda Rahmatyan , Vera Pantelic , Mark Lawford , Angelo Gargantini , Claudio Menghi

This paper presents a selective survey of recent developments in statistical inference and multiple testing for high-dimensional regression models, including linear and logistic regression. We examine the construction of confidence…

Methodology · Statistics 2023-01-26 T. Tony Cai , Zijian Guo , Yin Xia

Scaling properties of gamma-spectra recorded by semiconductor detectors are investigated. For practical purposes the method of simulation multicomponent spectra using single experimental spectrum are suggested.

Instrumentation and Detectors · Physics 2012-11-21 E. G. Obrazovskii

We show that genealogical trees arising from a broad class of non-neutral models of population evolution converge to the Kingman coalescent under a suitable rescaling of time. As well as non-neutral biological evolution, our results apply…

Probability · Mathematics 2025-04-09 Jere Koskela , Paul A. Jenkins , Adam M. Johansen , Dario Spano

Incomplete lineage sorting (ILS) is a common source of gene tree incongruence in multilocus analyses. A large number of methods have been developed to infer species trees in the presence of ILS. Here we provide a mathematical analysis of…

Probability · Mathematics 2012-07-18 Sebastien Roch

The utilization of Transformer-based models prospers the growth of multi-document summarization (MDS). Given the huge impact and widespread adoption of Transformer-based models in various natural language processing tasks, investigating…

Computation and Language · Computer Science 2024-07-17 Congbo Ma , Wei Emma Zhang , Dileepa Pitawela , Haojie Zhuang , Yanfeng Shu

In this article, we propose a new approach for simulating trees, including their branches, sub-branches, and leaves. This approach combines the theory of biological development, mathematical models, and computer graphics, producing…

Robotics · Computer Science 2020-01-15 M. Hassan Tanveer , Antony Thomas , Xiaowei Wu , Hongxiao Zhu

Many important problems in psychology and biomedical studies require testing for overdispersion, correlation and heterogeneity in mixed effects and latent variable models, and score tests are particularly useful for this purpose. But the…

Statistics Theory · Mathematics 2007-06-13 Hongtu Zhu , Heping Zhang

The OSTSC package is a powerful oversampling approach for classifying univariant, but multinomial time series data in R. This article provides a brief overview of the oversampling methodology implemented by the package. A tutorial of the…

Computation · Statistics 2017-11-28 Matthew Dixon , Diego Klabjan , Lan Wei

Simulation studies are indispensable for evaluating statistical methods and ubiquitous in statistical research. The most common simulation approach is parametric simulation, where the data-generating mechanism (DGM) corresponds to a…

Multiparticle collision dynamics (MPC), a particle-based mesoscale simulation technique for com- plex fluid, is widely employed in non-equilibrium simulations of soft matter systems. To maintain a defined thermodynamic state, thermalization…

Soft Condensed Matter · Physics 2015-03-30 Chien-Cheng Huang , Anoop Varghese , Gerhard Gompper , Roland G. Winkler

This paper has a practical aim. For a long time, implementations of pseudorandom number generators in standard libraries of programming languages had poor quality. The situation started to improve only recently. Up to now, a large number of…

Mathematical Software · Computer Science 2020-04-21 Migran N. Gevorkyan , Dmitry S. Kulyabov , Anastasia V. Demidova , Anna V. Korolkova

Sparse coding aims to model data vectors as sparse linear combinations of basis elements, but a majority of related studies are restricted to continuous data without spatial or temporal structure. A new model-based sparse coding (MSC)…

Methodology · Statistics 2021-08-24 Xin Xing , Rui Xie , Wenxuan Zhong