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XML is gradually employed as a standard of data exchange in web environment since its inception in the 90s until present. It serves as a data exchange between systems and other applications. Meanwhile the data volume has grown substantially…

Databases · Computer Science 2015-05-14 Kok-Leong Koong , Su-Cheng Haw , Lay-Ki Soon , Samini Subramaniam

The classical method of determining the atomic structure of complex molecules by analyzing diffraction patterns is currently undergoing drastic developments. Modern techniques for producing extremely bright and coherent X-ray lasers allow a…

Biomolecules · Quantitative Biology 2015-10-12 Tomas Ekeberg , Stefan Engblom , Jing Liu

Deep learning methods have reached state-of-the-art performance in cardiac image segmentation. Currently, the main bottleneck towards their effective translation into clinics requires assuring continuous high model performance and…

Image and Video Processing · Electrical Eng. & Systems 2021-06-15 Francesco Galati , Maria A. Zuluaga

Generating desirable molecular structures in 3D is a fundamental problem for drug discovery. Despite the considerable progress we have achieved, existing methods usually generate molecules in atom resolution and ignore intrinsic local…

Biomolecules · Quantitative Biology 2023-05-29 Bo Qiang , Yuxuan Song , Minkai Xu , Jingjing Gong , Bowen Gao , Hao Zhou , Weiying Ma , Yanyan Lan

Antibiotic resistance presents a growing global health crisis, demanding new therapeutic strategies that target novel bacterial mechanisms. Recent advances in protein structure prediction and machine learning-driven molecule generation…

Biomolecules · Quantitative Biology 2025-05-22 Maximilian G. Schuh , Joshua Hesse , Stephan A. Sieber

In recent years the importance of finding a meaningful pattern from huge datasets has become more challenging. Data miners try to adopt innovative methods to face this problem by applying feature selection methods. In this paper we propose…

Machine Learning · Computer Science 2014-03-11 Mehdi Naseriparsa , Amir-masoud Bidgoli , Touraj Varaee

Word segmentation is the task of inserting or deleting word boundary characters in order to separate character sequences that correspond to words in some language. In this article we propose an approach based on a beam search algorithm and…

Computation and Language · Computer Science 2018-12-04 Yerai Doval , Carlos Gómez-Rodríguez

To overcome the barrier of storage and computation, the hashing technique has been widely used for nearest neighbor search in multimedia retrieval applications recently. Particularly, cross-modal retrieval that searches across different…

Information Retrieval · Computer Science 2019-05-16 Sarawut Markchit , Chih-Yi Chiu

Program obfuscation is increasingly popular among malware creators. Objectively comparing different malware detection approaches with respect to their resilience against obfuscation is challenging. To the best of our knowledge, there is no…

Cryptography and Security · Computer Science 2015-02-16 Sebastian Banescu , Tobias Wüchner , Marius Guggenmos , Martín Ochoa , Alexander Pretschner

Combination therapy has shown to improve therapeutic efficacy while reducing side effects. Importantly, it has become an indispensable strategy to overcome resistance in antibiotics, anti-microbials, and anti-cancer drugs. Facing enormous…

Molecular Networks · Quantitative Biology 2020-04-24 Mostafa Karimi , Arman Hasanzadeh , Yang shen

Large Language Models (LLMs) have achieved human-level fluency in text generation, making it difficult to distinguish between human-written and LLM-generated texts. This poses a growing risk of misuse of LLMs and demands the development of…

Computation and Language · Computer Science 2024-02-20 Ryuto Koike , Masahiro Kaneko , Naoaki Okazaki

This work presents a robust multi-class classification framework for handwritten digits that combines diffusion-driven feature denoising with a hybrid feature representation. Inspired by our previous work on brain tumor classification, the…

Computer Vision and Pattern Recognition · Computer Science 2026-05-14 Hiba Adil Al-kharsan , Róbert Rajkó

In the study of drug function and precision medicine, identifying new drug-microbe associations is crucial. However, current methods isolate association and similarity analysis of drug and microbe, lacking effective inter-view optimization…

Machine Learning · Computer Science 2025-06-24 Xin An , Ruijie Li , Qiao Ning , Shikai Guo , Hui Li , Qian Ma

Medical image segmentation has been significantly advanced with the rapid development of deep learning (DL) techniques. Existing DL-based segmentation models are typically discriminative; i.e., they aim to learn a mapping from the input…

Computer Vision and Pattern Recognition · Computer Science 2025-09-01 Tao Chen , Chenhui Wang , Zhihao Chen , Yiming Lei , Hongming Shan

In this article the most fundamental decomposition-based optimization method - block coordinate search, based on the sequential decomposition of problems in subproblems - and building performance simulation programs are used to reason about…

Optimization and Control · Mathematics 2016-09-12 Gian Luca Brunetti

Communication and coordination play a major role in the ability of bacterial cells to adapt to ever changing environments and conditions. Recent work has shown that such coordination underlies several aspects of bacterial responses…

Quantitative Methods · Quantitative Biology 2016-04-12 Shashank Singh , Sabrina Rashid , Zhicheng Long , Saket Navlakha , Hanna Salman , Zoltan N. Oltvai , Ziv Bar-Joseph

The abundance of intestinal flora is closely related to human diseases, but diseases are not caused by a single gut microbe. Instead, they result from the complex interplay of numerous microbial entities. This intricate and implicit…

Artificial Intelligence · Computer Science 2024-08-01 Dingkun Liu , Hongjie Zhou , Yilu Qu , Huimei Zhang , Yongdong Xu

Searching for novel molecular compounds with desired properties is an important problem in drug discovery. Many existing frameworks generate molecules one atom at a time. We instead propose a flexible editing paradigm that generates…

Biomolecules · Quantitative Biology 2021-11-02 Benson Chen , Xiang Fu , Regina Barzilay , Tommi Jaakkola

Organizing interesting webpages into hot topics is one of key steps to understand the trends of multimodal web data. A state-of-the-art solution is firstly to organize webpages into a large volume of multi-granularity topic candidates; hot…

Information Retrieval · Computer Science 2024-09-20 Junbiao Pang , Anjing Hu , Qingming Huang

Finding the reduced-dimensional structure is critical to understanding complex networks. Existing approaches such as spectral clustering are applicable only when the full network is explicitly observed. In this paper, we focus on the online…

Machine Learning · Computer Science 2017-12-13 Lin F. Yang , Vladimir Braverman , Tuo Zhao , Mengdi Wang
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