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Python software development heavily relies on third-party packages. Direct and transitive dependencies create a labyrinth of software supply chains. While it is convenient to reuse code, vulnerabilities within these dependency chains can…

Cryptography and Security · Computer Science 2026-03-11 Jacob Mahon , Chenxi Hou , Zhihao Yao

Different security issues are a common problem for open source packages archived to and delivered through software ecosystems. These often manifest themselves as software weaknesses that may lead to concrete software vulnerabilities. This…

Software Engineering · Computer Science 2021-12-28 Jukka Ruohonen , Kalle Hjerppe , Kalle Rindell

PyPI provides a convenient and accessible package management platform to developers, enabling them to quickly implement specific functions and improve work efficiency. However, the rapid development of the PyPI ecosystem has led to a severe…

Software Engineering · Computer Science 2023-09-21 Wenbo Guo , Zhengzi Xu , Chengwei Liu , Cheng Huang , Yong Fang , Yang Liu

A package's source code repository records the development history of the package, providing indispensable information for the use and risk monitoring of the package. However, a package release often misses its source code repository due to…

Software Engineering · Computer Science 2024-04-26 Kai Gao , Weiwei Xu , Wenhao Yang , Minghui Zhou

In this research, we present a comprehensive, longitudinal empirical summary of the R package ecosystem, including not just CRAN, but also Bioconductor and GitHub. We analyze more than 25,000 packages, 150,000 releases, and 15 million files…

Mathematical Software · Computer Science 2021-02-22 Ethan Bommarito , Michael J Bommarito

Python is widely used in the open-source community, largely owing to the extensive support from diverse third-party libraries within the PyPI ecosystem. Nevertheless, the utilization of third-party libraries can potentially lead to…

Software Engineering · Computer Science 2024-01-08 Yun Peng , Ruida Hu , Ruoke Wang , Cuiyun Gao , Shuqing Li , Michael R. Lyu

This paper examines software vulnerabilities in common Python packages used particularly for web development. The empirical dataset is based on the PyPI package repository and the so-called Safety DB used to track vulnerabilities in…

Software Engineering · Computer Science 2019-03-12 Jukka Ruohonen

The popularity of Python has risen rapidly over the past 15 years. It is a major language in some of the most exciting technologies today. This popularity has led to a large ecosystem of third-party packages available via the pip package…

Cryptography and Security · Computer Science 2021-02-15 Aadesh Bagmar , Josiah Wedgwood , Dave Levin , Jim Purtilo

Current software supply chains heavily rely on open-source packages hosted in public repositories. Given the popularity of ecosystems like npm and PyPI, malicious users started to spread malware by publishing open-source packages containing…

Cryptography and Security · Computer Science 2023-10-17 Piergiorgio Ladisa , Serena Elisa Ponta , Nicola Ronzoni , Matias Martinez , Olivier Barais

This paper presents a systematic review of Python packages with a focus on time series analysis. The objective is to provide (1) an overview of the different time series analysis tasks and preprocessing methods implemented, and (2) an…

Mathematical Software · Computer Science 2021-06-23 Julien Siebert , Janek Groß , Christof Schroth

The widespread adoption of open-source ecosystems enables developers to integrate third-party packages, but also exposes them to malicious packages crafted to execute harmful behavior via public repositories such as PyPI. Existing datasets…

Cryptography and Security · Computer Science 2025-12-16 Ahmed Ryan , Junaid Mansur Ifti , Md Erfan , Akond Ashfaque Ur Rahman , Md Rayhanur Rahman

Background: Open Source Software (OSS) libraries form the backbone of modern software systems, yet their long-term sustainability often depends on maintainers being reachable for support, coordination, and security reporting. Aims: In this…

Software Engineering · Computer Science 2026-05-04 Alexandros Tsakpinis , Alexander Pretschner

In the rapidly evolving software development landscape, Python stands out for its simplicity, versatility, and extensive ecosystem. Python packages, as units of organization, reusability, and distribution, have become a pressing concern,…

Software Engineering · Computer Science 2025-09-05 Haowei Quan , Junjie Wang , Xinzhe Li , Terry Yue Zhuo , Xiao Chen , Xiaoning Du

An increase in diverse technology stacks and third-party library usage has led developers to inevitably switch technologies. To assist these developers, maintainers have started to release their libraries to multiple technologies, i.e., a…

Background. In modern software development, the use of external libraries and packages is increasingly prevalent, streamlining the software development process and enabling developers to deploy feature-rich systems with little coding. While…

Software Engineering · Computer Science 2024-12-09 Haya Samaana , Diego Elias Costa , Emad Shihab , Ahmad Abdellatif

Python applications depend on third-party native libraries that may be vendored within package distributions or installed on the host system. When vulnerabilities are discovered in these native libraries, determining which Python packages…

A large scale collection of both semantic and natural language resources is essential to leverage active Software Engineering research areas such as code reuse and code comprehensibility. Existing machine learning models ingest data from…

We consider the problem of identifying the provenance of free/open source software (FOSS) and specifically the need of identifying where reused source code has been copied from. We propose a lightweight approach to solve the problem based…

Software Engineering · Computer Science 2023-05-25 Yiming Sun , Daniel M. German , Stefano Zacchiroli

The reuse and distribution of open-source software must be in compliance with its accompanying open-source license. In modern packaging ecosystems, maintaining such compliance is challenging because a package may have a complex…

Software Engineering · Computer Science 2023-08-14 Weiwei Xu , Hao He , Kai Gao , Minghui Zhou

Selecting third-party software packages in open-source ecosystems like Python is challenging due to the large number of alternatives and limited transparent evidence for comparison. Generative AI tools are increasingly used in development…

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