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Transitions between different conformational states are ubiquitous in proteins, being involved in signaling, catalysis and other fundamental activities in cells. However, modeling those processes is extremely difficult, due to the need of…
Polymorphism is ubiquitous in crystalline solids. Amorphous solids, such as glassy water and silicon, may undergo amorphous-to-amorphous transitions (AATs). The nature of AATs remains ambiguous, due to diverse system-dependent behaviors and…
We present a simple model of alignment of a large number of rigid bodies (modeled by rotation matrices) subject to internal rotational noise. The numerical simulations exhibit a phenomenon of first order phase transition with respect the…
Spatiotemporal coordination of chromatin and subnuclear compartments is crucial for cells. Numerous enzymes act inside nucleus\textemdash some of those transiently link and pass two chromatin segments. Here we study how such an active…
We study phase-transitions of the ferromagnetic $q$-state Potts chain with random nearest-neighbour couplings having a variance $\Delta^2$ and with homogeneous long-range interactions, which decay with the distance as a power…
We study a continuous quasi-two-dimensional order-disorder phase transition that occurs in a simple model of a material that is inhomogeneously strained due to the presence of dislocation lines. Performing Monte Carlo simulations of…
Two dimensional Potts model is a classical example where the symmetry of the order parameter controls the order of a phase transition: on a square lattice with nearest-neighbours interaction, when the number of states $q$ is less than or…
We investigate the influence of aperiodic modulations of the exchange interactions between nearest-neighbour rows on the phase transition of the two-dimensional eight-state Potts model. The systems are studied numerically through intensive…
Essential life processes take place across multiple space and time scales in living organisms but understanding their mechanistic interactions remains an ongoing challenge. Advanced multiscale modeling techniques are providing new…
A phase structure and phase transitions are investigated in the modified Bonn quark model. The force strength, which represents the particle-hole type interaction, is devised so as to depend on the quark number, namely quark number density.…
We investigate a 4-state ferromagnetic Potts model with a special type of geometrical frustration on a three dimensional diamond lattice by means of Wang-Landau Monte Carlo simulation motivated by a peculiar structural phase transition…
Intact-organism imaging of Drosophila larvae reveals and quantifies chromatin-aqueous phase separation. The chromatin can be organized near the lamina layer of the nuclear envelope, conventionally fill the nucleus, be organized centrally,…
We consider general disordered models of pinning of directed polymers on a defect line. This class contains in particular the $(1+1)$--dimensional interface wetting model, the disordered Poland--Scheraga model of DNA denaturation and other…
Motivated by the experiments on the organic compound $(Per)_{2}[Pt(mnt)_{2}]$, we study the ground state of the one-dimensional Kondo lattice model at quarter filling with the density matrix renormalization group method. We show a coupled…
We employ the recently introduced generalized microcanonical inflection point method for the statistical analysis of phase transitions in flexible and semiflexible polymers and study the impact of the bending stiffness upon the character…
We demonstrate strong coupling between molecular excited states and surface plasmon modes of a slit array in a thin metal film. The coupling manifests itself as an anti-crossing behavior of the two newly formed polaritons. As the coupling…
The influence of uncorrelated, quenched disorder on the phase transition of two dimensional Potts models will be reviewed. After an introduction where the conditions of relevance of quenched randomness on phase transitions are exemplified…
We consider polymers made of magnetic monomers (Ising or Heisenberg-like) in a good solvent. These polymers are modeled as self-avoiding walks on a cubic lattice, and the ferromagnetic interaction between the spins carried by the monomers…
Continuum models of plasticity fail to capture the richness of microstructural evolution because the continuum is a homogeneous construction. The present study shows that an alternative way is available at the mesoscale in the form of truly…
The generic changes of the electronic compressibility in systems which show magnetic instabilities is studied. It is shown that, when going into the ordered phase, the compressibility is reduced by an amount comparable to the its original…