Related papers: Chromatin state switching in a polymer model with …
Chromatin looping is a major epigenetic regulatory mechanism in higher eukaryotes. Besides its role in transcriptional regulation, chromatin loops have been proposed to play a pivotal role in the segregation of entire chromosomes. The…
We consider the ferromagnetic large-$q$ state Potts model in complex evolving networks, which is equivalent to an optimal cooperation problem, in which the agents try to optimize the total sum of pair cooperation benefits and the supports…
We introduce and analyze an exactly soluble one-dimensional Ising model with long range interactions which exhibits a mixed order transition (MOT), namely a phase transition in which the order parameter is discontinuous as in first order…
A physics-based analytical model describing the phase transition from crystalline to conformationally disordered (condis) crystalline phase is developed. In the model, the free energy is written as a function of temperature and the lattice…
Given the wide range of length scales, the analysis of polymer systems often requires coarse-graining, for which various levels of description may be possible depending on the phenomenon under consideration. Here, we provide a super-coarse…
In complex electronic materials, coupling between electrons and the atomic lattice gives rise to remarkable phenomena, including colossal magnetoresistance and metal-insulator transitions. Charge-ordered phases are a prototypical…
The spreading and regulation of epigenetic marks on chromosomes is crucial to establish and maintain cellular identity. Nonetheless, the dynamical mechanism leading to the establishment and maintenance of a given, cell-line specific,…
We investigate the low-energy properties of the orthogonal-dimer spin chain characterized by a frustrated dimer-plaquette structure. When the competing antiferromagnetic couplings are varied, the first-order quantum phase transition occurs…
The phase transition in the q-state Potts model with homogeneous ferromagnetic couplings is strongly first order for large q, while is rounded in the presence of quenched disorder. Here we study this phenomenon on different two-dimensional…
Exciton polaritons, arising from the interaction of electronic transitions with confined electromagnetic fields, have emerged as a powerful tool to manipulate the properties of organic materials. However, standard experimental and…
The variational cluster approximation is used to study the ground-state properties and single-particle spectra of the three-component fermionic Hubbard model defined on the two-dimensional square lattice at half filling. First, we show that…
It is widely believed that the phase transition for the four-state ferromagnetic Potts model on the square lattice is of the pseudo-first order. Specifically, it is expected that first-order phase transition behavior is found on small…
Three-dimensional (3D) chromatin structure is closely related to genome function, in particular transcription. However, the folding path of the chromatin fiber in the interphase nucleus is unknown. Here, we systematically measured the 3D…
The electronic properties of quarter-filled organic materials showing spin-Peierls transition are investigated theoretically. By studying the one-dimensional extended Peierls-Hubbard model analytically as well as numerically, we find that…
We study a lattice model of a single magnetic polymer chain, where Ising spins are located on the sites of a lattice self-avoiding walk in $d=2$. We consider the regime where both conformations and magnetic degrees of freedom are dynamic,…
The checkerboard lattice, with alternating 'crossed' plaquettes, serves as the two dimensional analog of the pyrochlore lattice. The corner sharing plaquette structure leads to a hugely degenerate ground state, and no magnetic order, for…
We present the first detailed numerical study in three dimensions of a first-order phase transition that remains first-order in the presence of quenched disorder (specifically, the ferromagnetic/paramagnetic transition of the site-diluted…
These notes are devoted to the statistical mechanics of directed polymers interacting with one-dimensional spatial defects. We are interested in particular in the situation where frozen disorder is present. These polymer models undergo a…
We investigate the continuum q-Potts model at its transition point from the disordered to the ordered regime, with particular emphasis on the coexistence of disordered and ordered phases in the high-q case. We argue that occurrence of phase…
We consider a system of clusters made of elementary building blocks, monomers, and evolving via collisions between diffusing monomers and immobile composite clusters. In our model, the cluster-monomer collision can lead to the attachment of…