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A simple but empirically efficient heuristic algorithm for the edge-coloring of graphs is presented. Its basic idea is the displacement of "conflicts" (repeated colors in the edges incident to a vertex) along paths of adjacent vertices…
Suppose that the vertices of a graph $G$ are colored with two colors in an unknown way. The color that occurs on more than half of the vertices is called the majority color (if it exists), and any vertex of this color is called a majority…
Given a graph $G$ that is modified by a sequence of edge insertions and deletions, we study the Maximum $k$-Edge Coloring problem Having access to $k$ colors, how can we color as many edges of $G$ as possible such that no two adjacent edges…
Reconstruction of evolutionary relationships between species is an important topic in the field of computational biology. Pairwise compatibility graphs (PCGs) are used to model such relationships. A graph is a PCG if its edges can be…
Arboricity is a graph parameter akin to chromatic number, in that it seeks to partition the vertices into the smallest number of sparse subgraphs. Where for the chromatic number we are partitioning the vertices into independent sets, for…
The reconfiguration graph $R_k(G)$ of the $k$-colourings of a graph $G$ contains as its vertex set the $k$-colourings of $G$ and two colourings are joined by an edge if they differ in colour on just one vertex of $G$. We show that for each…
Orthologous genes, which arise through speciation, play a key role in comparative genomics and functional inference. In particular, graph-based methods allow for the inference of orthology estimates without prior knowledge of the underlying…
We develop a new framework for generalizing approximation algorithms from the structural graph algorithm literature so that they apply to graphs somewhat close to that class (a scenario we expect is common when working with real-world…
Recent investigations in computational biology have focused on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
We consider the problem of exact and inexact matching of weighted undirected graphs, in which a bijective correspondence is sought to minimize a quadratic weight disagreement. This computationally challenging problem is often relaxed as a…
Many graph coloring proofs proceed by showing that a minimal counterexample to the theorem being proved cannot contain certain configurations, and then showing that each graph under consideration contains at least one such configuration;…
We define Gaussian graphical models on directed acyclic graphs with coloured vertices and edges, calling them RDAG (restricted directed acyclic graph) models. If two vertices or edges have the same colour, their parameters in the model must…
Quantifying the similarity between two graphs is a fundamental algorithmic problem at the heart of many data analysis tasks for graph-based data. In this paper, we study the computational complexity of a family of similarity measures based…
In the Coloured Clustering problem, we wish to colour vertices of an edge coloured graph to produce as many stable edges as possible, i.e., edges with the same colour as their ends. In this paper, we reveal that the problem is in fact a…
In this paper, we show that any $B_2$-VPG graph (i.e., an intersection graph of orthogonal curves with at most 2 bends) can be decomposed into $O(\log n)$ outerstring graphs or $O(\log^3 n)$ permutation graphs. This leads to better…
A matching cut is a matching that is also an edge cut. In the problem Minimum Matching Cut, we ask for a matching cut with the minimum number of edges in the matching. We investigate the differences in complexity between Minimum Matching…
Motivated by the analogous questions in graphs, we study the complexity of coloring and stable set problems in hypergraphs with forbidden substructures and bounded edge size. Letting $\nu(G)$ denote the maximum size of a matching in $H$, we…
An edge-colored graph $G$ is {\em rainbow connected} if any two vertices are connected by a path whose edges have distinct colors. The {\em rainbow connection} of a connected graph $G$, denoted $rc(G)$, is the smallest number of colors that…
Graph coloring is one of the most famous computational problems with applications in a wide range of areas such as planning and scheduling, resource allocation, and pattern matching. So far coloring problems are mostly studied on static…
A connected component of a vertex-coloured graph is said to be colourful if all its vertices have different colours. By extension, a graph is colourful if all its connected components are colourful. Given a vertex-coloured graph $G$ and an…