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Aberration corrected scanning transmission electron microscopes (STEM) enable to determine local strain fields, composition and bonding states at atomic resolution. The precision to locate atomic columns is often obstructed by scan…

Applied Physics · Physics 2019-01-16 Benjamin Berkels , Christian H. Liebscher

Molecular motors and other complex nonequilibrium systems are controlled by large sets of design parameters, and optimizing those parameters requires computing sensitivities -- derivatives of dynamical observables with respect to the…

Statistical Mechanics · Physics 2026-05-12 John Strahan , Todd R. Gingrich

The nanoparticle size and distribution information in the SEM images of silicon crystals are generally counted by manual methods. The realization of automatic machine recognition is significant in materials science. This paper proposed a…

Computer Vision and Pattern Recognition · Computer Science 2022-06-07 Ruiling Xiao , Jiayang Niu

Single atomic sites often determine the functionality and performance of materials, such as catalysts, semi-conductors or enzymes. Computing and understanding the properties of such sites is therefore a crucial component of the rational…

Formation, maintenance and physiology of high-density protein-enriched organized nanodomains, first observed in electron microscopy images, remains challenging to investigate due to their small sizes. However, these regions regulate…

Quantitative Methods · Quantitative Biology 2023-12-29 Pierre Parutto , Jennifer Heck , Martin Heine , David Holcman

We introduce a denoising method for four-dimensional scanning transmission electron microscopy (4D-STEM) that relies on processing local, scan position-independent electron event-sparse data stacks, called event-sparse stack denoising. This…

Medical Physics · Physics 2025-12-12 Gregory Nordahl , Rebekka Klemmt , Espen Drath Bøjesen

Spiking Neural Networks (SNN) and the field of Neuromorphic Engineering has brought about a paradigm shift in how to approach Machine Learning (ML) and Computer Vision (CV) problem. This paradigm shift comes from the adaption of event-based…

Computer Vision and Pattern Recognition · Computer Science 2021-11-15 Paul Kirkland , Davide L. Manna , Alex Vicente-Sola , Gaetano Di Caterina

Reconstructing charged particle tracks is a fundamental task in modern collider experiments. The unprecedented particle multiplicities expected at the High-Luminosity Large Hadron Collider (HL-LHC) pose significant challenges for track…

High Energy Physics - Experiment · Physics 2025-12-16 Samuel Van Stroud , Philippa Duckett , Max Hart , Nikita Pond , Sébastien Rettie , Gabriel Facini , Tim Scanlon

The desire to control and measure individual quantum systems such as atoms and ions in a vacuum has led to significant scientific and engineering developments in the past decades that form the basis of today's quantum information science.…

Applied Physics · Physics 2022-02-16 Yi Chen , Yujeong Bae , Andreas J. Heinrich

In this paper, we have designed a low-cost scanning tunneling microscope (STM) priced at 300 USD or 2000 CNY. This microscope is suitable for educational purposes and low-demand research imaging at the nanometer level. This microscope's…

Instrumentation and Detectors · Physics 2024-01-17 Weilin Ma

The interpretation of experimental spatially resolved scanning tunneling spectroscopy (STS) maps of close-shell molecules on surfaces is usually interpreted within the framework of oneelectron molecular orbitals. Although this standard…

Materials Science · Physics 2025-04-09 Manish Kumar , Diego Soler , Marco Lozano , Enzo Monino , Libor Veis , Pavel Jelinek

Recent years have shown steady progress in research towards molecular electronics [1,2], where molecules have been investigated as switches [3-5], diodes [6], and electronic mixers [7]. In much of the previous work a Scanning Tunnelling…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 R. H. M. Smit , Y. Noat , C. Untiedt , N. D. Lang , M. van Hemert , J. M. van Ruitenbeek

We report on a novel scheme to perform efficient simulations of Scanning Tunneling Microscopy (STM) of molecules weakly bonded to surfaces. Calculations are based on a tight binding (TB) technique including self-consistency for the molecule…

Materials Science · Physics 2009-11-11 M. Dubois , S. Latil , L. Scifo , B. Grevin , A. Rubio

Molecular orbital (MO) is one of the most fundamental concepts for molecules, relating to all branches of chemistry, while scanning tunneling microscopy (STM) has been widely recognized for its potential to measure the spatial distribution…

Chemical Physics · Physics 2025-08-01 Yu Zhu , Renjie Xue , Hao Ren , Yicheng Chen , Wenjie Yan , Bingzheng Wu , Sai Duan , Haiming Zhang , Lifeng Chi , Xin Xu

We report the design and fabrication of guiding patterns for topography-based searching of two-dimensional (2D) devices for scanning tunneling microscopy (STM) measurements. Sub-micron geometric coordinate markers were etched into SiO2/Si…

Strongly Correlated Electrons · Physics 2026-01-28 Huandong Chen , Hong Li , Yutao Li , He Zhao , Ming Lu , Kazuhiro Fujita , Abhay N. Pasupathy

Single Molecule Localization Microscopy (SMLM) enables the acquisition of high-resolution images by alternating between activation of a sparse subset of fluorescent molecules present in a sample and localization. In this work, the…

Image and Video Processing · Electrical Eng. & Systems 2018-12-17 Arne Bechensteen , Laure Blanc-Féraud , Gilles Aubert

We deploy an advanced Machine Learning (ML) environment, leveraging a multi-scale cross-attention encoder for event classification, towards the identification of the $gg\to H\to hh\to b\bar b b\bar b$ process at the High Luminosity Large…

High Energy Physics - Phenomenology · Physics 2024-02-16 A. Hammad , S. Moretti , M. Nojiri

Ultrasound Localization Microscopy (ULM) is an emerging technique that employs the localization of echogenic microbubbles (MBs) to finely sample and image the microcirculation beyond the diffraction limit of ultrasound imaging. Conventional…

Image and Video Processing · Electrical Eng. & Systems 2022-09-27 Sepideh K. Gharamaleki , Brandon Helfield , Hassan Rivaz

Single-molecule magnets (SMMs) with chemically tailorable properties are potential building blocks for quantum computing, high-density magnetic memory, and spintronics.1 2 3,4 These applications require isolated or few molecules on…

We describe an all-optical lithography process that can be used to make electrical contact to atomic-precision donor devices made in silicon using scanning tunneling microscopy (STM). This is accomplished by implementing a cleaning…