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Laboratory models are often used to understand the interaction of related pathogens via host immunity. For example, recent experiments where ferrets were exposed to two influenza strains within a short period of time have shown how the…

Populations and Evolution · Quantitative Biology 2018-06-06 Ada W. C. Yan , Sophie G. Zaloumis , Julie A. Simpson , James M. McCaw

The accurate estimation of time-varying transmission rates is fundamental for understanding infectious disease dynamics and implementing effective public health interventions. To this end, we propose an improved inverse method for…

Populations and Evolution · Quantitative Biology 2025-12-17 Shuanglin Jing , Yuting Huang , Hai-Feng Huo

This study estimates the overall effect of two influenza vaccination programs consecutively administered in a cluster-randomized trial in western Senegal over the course of two influenza seasons from 2009-2011. We apply cutting-edge…

This work proposes a novel approach based on sequence-to-sequence (seq2seq) models for context-aware conversational systems. Exist- ing seq2seq models have been shown to be good for generating natural responses in a data-driven…

Computation and Language · Computer Science 2018-05-23 Silje Christensen , Simen Johnsrud , Massimiliano Ruocco , Heri Ramampiaro

Sequence-to-Sequence (seq2seq) modeling has rapidly become an important general-purpose NLP tool that has proven effective for many text-generation and sequence-labeling tasks. Seq2seq builds on deep neural language modeling and inherits…

Computation and Language · Computer Science 2016-11-11 Sam Wiseman , Alexander M. Rush

Influenza A is a serious disease that causes significant morbidity and mortality, and vaccines against the seasonal influenza disease are of variable effectiveness. In this paper, we discuss use of the $p_{\rm epitope}$ method to predict…

Populations and Evolution · Quantitative Biology 2016-03-22 Xi Li , Michael W. Deem

The task of predicting dialog acts (DA) based on conversational dialog is a key component in the development of conversational agents. Accurately predicting DAs requires a precise modeling of both the conversation and the global tag…

Computation and Language · Computer Science 2020-02-27 Pierre Colombo , Emile Chapuis , Matteo Manica , Emmanuel Vignon , Giovanna Varni , Chloe Clavel

Multistep traffic forecasting on road networks is a crucial task in successful intelligent transportation system applications. To capture the complex non-stationary temporal dynamics and spatial dependency in multistep traffic-condition…

Machine Learning · Computer Science 2018-10-30 Zhengchao Zhang , Meng Li , Xi Lin , Yinhai Wang , Fang He

As the COVID-19 spread over the globe and new variants of COVID-19 keep occurring, reliable real-time forecasts of COVID-19 hospitalizations are critical for public health decision on medical resources allocations such as ICU beds,…

Machine Learning · Computer Science 2022-02-09 Tao Wang , Simin Ma , Soobin Baek , Shihao Yang

Sequential Recommendation is a prominent topic in current research, which uses user behavior sequence as an input to predict future behavior. By assessing the correlation strength of historical behavior through the dot product, the model…

Information Retrieval · Computer Science 2023-02-23 Jiayi Chen , Wen Wu , Liye Shi , Yu Ji , Wenxin Hu , Xi Chen , Wei Zheng , Liang He

We consider incorporating topic information into the sequence-to-sequence framework to generate informative and interesting responses for chatbots. To this end, we propose a topic aware sequence-to-sequence (TA-Seq2Seq) model. The model…

Computation and Language · Computer Science 2016-09-20 Chen Xing , Wei Wu , Yu Wu , Jie Liu , Yalou Huang , Ming Zhou , Wei-Ying Ma

Flu circulates all over the world. The worldwide infection places a substantial burden on people's health every year. Regardless of the characteristic of the worldwide circulation of flu, most previous studies focused on regional prediction…

Computers and Society · Computer Science 2021-02-17 Jie Zhang , Kazumitsu Nawata , Hongyan Wu

This article reviews quantitative methods to estimate the basic reproduction number of pandemic influenza, a key threshold quantity to help determine the intensity of interventions required to control the disease. Although it is difficult…

Populations and Evolution · Quantitative Biology 2009-11-13 Gerardo Chowell , Hiroshi Nishiura

Detecting the origin of information or infection spread in networks is a fundamental challenge with applications in misinformation tracking, epidemiology, and beyond. We study the multi-source detection problem: given snapshot observations…

Social and Information Networks · Computer Science 2025-12-02 Xingchao Jian , Purui Zhang , Lan Tian , Feng Ji , Wenfei Liang , Wee Peng Tay , Bihan Wen , Felix Krahmer

Seasonal influenza is a significant public health concern in the United States and globally. While influenza vaccines are the single most effective intervention to reduce influenza morbidity and mortality, there is considerable debate…

Populations and Evolution · Quantitative Biology 2015-01-07 Eric Mooring , Shweta Bansal

This work aims to predict channels in wireless communication systems based on noisy observations, utilizing sequence-to-sequence models with attention (Seq2Seq-attn) and transformer models. Both models are adapted from natural language…

Machine Learning · Statistics 2025-09-05 Valentina Rizzello , Benedikt Böck , Michael Joham , Wolfgang Utschick

The recently proposed Sequence-to-Sequence (seq2seq) framework advocates replacing complex data processing pipelines, such as an entire automatic speech recognition system, with a single neural network trained in an end-to-end fashion. In…

Neural and Evolutionary Computing · Computer Science 2016-12-09 Jan Chorowski , Navdeep Jaitly

In a controlled experiment of sequence-to-sequence approaches for the task of sentence correction, we find that character-based models are generally more effective than word-based models and models that encode subword information via…

Computation and Language · Computer Science 2017-07-31 Allen Schmaltz , Yoon Kim , Alexander M. Rush , Stuart M. Shieber

A growing number of universities worldwide use various forms of online and blended learning as part of their academic curricula. Furthermore, the recent changes caused by the COVID-19 pandemic have led to a drastic increase in importance…

Machine Learning · Computer Science 2022-09-05 Galina Deeva , Johannes De Smedt , Cecilia Saint-Pierre , Richard Weber , Jochen De Weerdt

The characteristics of influenza seasons varies substantially from year to year, posing challenges for public health preparation and response. Influenza forecasting is used to inform seasonal outbreak response, which can in turn potentially…

Applications · Statistics 2022-03-16 Nutcha Wattanachit , Evan L. Ray , Thomas C. McAndrew , Nicholas G. Reich
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