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We study DNA self-assembly and DNA computation using a coarse-grained DNA model within the directional dynamic bonding framework {[}C. Svaneborg, Comp. Phys. Comm. 183, 1793 (2012){]}. In our model, a single nucleotide or domain is…

Soft Condensed Matter · Physics 2012-06-13 Carsten Svaneborg , Harold Fellermann , Steen Rasmussen

Using a combination of theory and experiments we study the interface between two immiscible domains in a colloidal membrane composed of rigid rods of different lengths. Geometric considerations of rigid rod packing imply that a domain of…

Single-stranded (ss) RNA viruses self-assemble spontaneously in solutions that contain the viral RNA genome molecules and viral capsid proteins. The self-assembly of empty capsids can be understood on the basis of free energy minimization.…

Biological Physics · Physics 2022-03-22 Inbal Mizrahi , Robijn Bruinsma , Joseph Rudnick

Discrete time crystals represent a paradigmatic nonequilibrium phase of periodically driven matter. Protecting its emergent spatiotemporal order necessitates a mechanism that hinders the spreading of defects, such as localization of domain…

Statistical Mechanics · Physics 2022-09-16 Mario Collura , Andrea De Luca , Davide Rossini , Alessio Lerose

Recent experiments showing scaling of the intrachromosomal contact probability, $P(s)\sim s^{-1}$ with the genomic distance $s$, are interpreted to mean a self-similar fractal-like chromosome organization. However, scaling of $P(s)$ varies…

Soft Condensed Matter · Physics 2016-12-28 Hongsuk Kang , Young-Gui Yoon , D. Thirumalai , Changbong Hyeon

Phase separation into compositionally and physically distinct domains is ubiquitous in (non)living matter ranging from alloys and emulsions to biomolecular condensates in cells. The organization of these domains can be controlled, for…

Soft Condensed Matter · Physics 2026-03-31 Andriy Goychuk

In this letter, we characterize experimentally the diffusiophoretic motion of colloids and lambda- DNA toward higher concentration of solutes, using microfluidic technology to build spatially- and temporally-controlled concentration…

Soft Condensed Matter · Physics 2010-04-09 J. Palacci , B. Abecassis , C. Cottin-Bizonne , C. Ybert , L. Bocquet

Short DNA linkers are increasingly being exploited for driving specific self-assembly of Brownian objects. DNA-functionalised colloids can assemble into ordered or amorphous materials with tailored morphology. Recently, the same approach…

Soft Condensed Matter · Physics 2015-01-12 Lucia Parolini , Bortolo M. Mognetti , Jurij Kotar , Erika Eiser , Pietro Cicuta , Lorenzo Di Michele

Quantum systems of many interacting particles at low temperatures generally organize themselves into ordered phases of matter, whose nature and symmetries are captured by an order parameter. In the simplest cases, this order parameter is…

Quantum Gases · Physics 2019-06-11 K. Jiménez-García , A. Invernizzi , B. Evrard , C. Frapolli , J. Dalibard , F. Gerbier

By equilibrating condensed DNA arrays against reservoirs of known osmotic stress and examining them with several structural probes, it has been possible to achieve a detailed thermodynamic and structural characterization of the change…

chem-ph · Physics 2009-10-28 R. Podgornik , H. H. Strey , K. Gawrisch , D. C. Rau , A. Rupprecht , V. A. Parsegian

Spin-orbit torque provides a powerful means of manipulating domain walls along magnetic wires. However, the current density required for domain wall motion is still too high to realize low power devices. Here we experimentally demonstrate…

Mesoscale and Nanoscale Physics · Physics 2019-03-06 Boyu Zhang , Yong Xu , Weisheng Zhao , Daoqian Zhu , Xiaoyang Lin , Michel Hehn , Gregory Malinowski , Dafiné Ravelosona , Stéphane Mangin

The interaction between light and matter can be controlled efficiently by structuring materials at a length scale shorter than the wavelength of interest. With the goal to build optical devices that operate at the nanoscale, plasmonics has…

Optics · Physics 2021-05-06 Na Liu , Tim Liedl

We study the dynamics of a particle in continuous time and space, the displacement of which is governed by an internal degree of freedom (spin). In one definite limit, the so-called quantum random walk is recovered but, although quite…

Quantum Physics · Physics 2009-11-10 Claude Aslangul

We carry out large-scale micromagnetic simulations which demonstrate that due to topological constraints, internal domain walls (Bloch lines) within extended domain walls are more robust than domain walls in nanowires. Thus, the possibility…

Materials Science · Physics 2015-09-17 Touko Herranen , Lasse Laurson

At the cutting edge of materials science, matter is designed to self-organize into structures that perform a wide range of functions. The past two decades have witnessed major innovations in the versatility of building blocks, ranging from…

Soft Condensed Matter · Physics 2022-09-26 Angus McMullen , Maitane Muñoz Basagoiti , Zorana Zeravcic , Jasna Brujic

Cells regulate gene expression in part by forming DNA-protein condensates in the nucleus. While existing theories describe the equilibrium size and stability of such condensates, their dynamics remain less understood. Here, we use…

Soft Condensed Matter · Physics 2025-12-22 Adam R. Lamson , Mohammadhossein Firouznia , Michael J. Shelley

The measured electric resistance of carbon nanotubes wrapped with DNA molecules depends strongly on the spin of the injected electrons. Motivated by these experiments, we study the effect of helix-shaped potentials on the electronic…

Mesoscale and Nanoscale Physics · Physics 2018-11-14 Yotam Perlitz , Karen Michaeli

Concentrated solutions of short blunt-ended DNA duplexes, down to 6 base pairs, are known to order into the nematic liquid crystal phase. This self-assembly is due to the stacking interactions between the duplex terminals that promotes…

Soft Condensed Matter · Physics 2015-05-30 Cristiano De Michele , Tommaso Bellini , Francesco Sciortino

In experiments on model membranes, a formation of large domains of different lipid composition is readily observed. However, no such phase separation is observed in the membranes of intact cells. Instead, a structure of small transient…

Soft Condensed Matter · Physics 2017-08-23 Timo Fischer , H. Jelger Risselada , Richard L. C. Vink

The membrane components of cellular organelles have been shown to segregate into domains as the result of biochemical maturation. We propose that the dynamical competition between maturation and lateral segregation of membrane components…

Subcellular Processes · Quantitative Biology 2015-06-17 Serge Dmitrieff , Pierre Sens