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Recognition of glomeruli lesions is the key for diagnosis and treatment planning in kidney pathology; however, the coexisting glomerular structures such as mesangial regions exacerbate the difficulties of this task. In this paper, we…

Image and Video Processing · Electrical Eng. & Systems 2022-03-14 Yang Nan , Fengyi Li , Peng Tang , Guyue Zhang , Caihong Zeng , Guotong Xie , Zhihong Liu , Guang Yang

Segmentation has long been essential in computer vision due to its numerous real-world applications. However, most traditional deep learning and machine learning models need help to capture geometric features such as size and convexity of…

Image and Video Processing · Electrical Eng. & Systems 2024-12-02 Huy Trinh , Khang Tran , Nam Nguyen , Tri Cao , Binh Nguyen

Moving from animal models to human applications in preclinical research encompasses a broad spectrum of disciplines in medical science. A fundamental element in the development of new drugs, treatments, diagnostic methods, and in deepening…

Image and Video Processing · Electrical Eng. & Systems 2025-02-10 Lining Yu , Mengmeng Yin , Ruining Deng , Quan Liu , Tianyuan Yao , Can Cui , Yitian Long , Yu Wang , Yaohong Wang , Shilin Zhao , Haichun Yang , Yuankai Huo

Fine-grained glomerular subtyping is central to kidney biopsy interpretation, but clinically valuable labels are scarce and difficult to obtain. Existing computational pathology approaches instead tend to evaluate coarse diseased…

The classification of glomerular lesions is a routine and essential task in renal pathology. Recently, machine learning approaches, especially deep learning algorithms, have been used to perform computer-aided lesion characterization of…

Quantitative Methods · Quantitative Biology 2021-01-20 Yuzhe Lu , Haichun Yang , Zheyu Zhu , Ruining Deng , Agnes B. Fogo , Yuankai Huo

Accurate detection and segmentation of glomeruli in kidney tissue are essential for diagnostic applications. Traditional deep learning methods primarily rely on semantic segmentation, which often fails to precisely delineate adjacent…

Tissues and Organs · Quantitative Biology 2026-04-17 Behnaz Elhaminia , Catherine King , Jiaqi Lv , Lorraine Harper , Paul Moss , Owen Cain , Dimitrios Chanouzas , Shan E Ahmed Raza

Graph Neural Networks (GNNs) have recently been found to excel in histopathology. However, an important histopathological task, where GNNs have not been extensively explored, is the classification of glomeruli health as an important…

Glomerulosclerosis, interstitial fibrosis, and tubular atrophy (IFTA) are histologic indicators of irrecoverable kidney injury. In standard clinical practice, the renal pathologist visually assesses, under the microscope, the percentage of…

Tissues and Organs · Quantitative Biology 2021-06-23 Brandon Ginley , Kuang-Yu Jen , Avi Rosenberg , Felicia Yen , Sanjay Jain , Agnes Fogo , Pinaki Sarder

Segmenting glomerular intraglomerular tissue and lesions traditionally depends on detailed morphological evaluations by expert nephropathologists, a labor-intensive process susceptible to interobserver variability. Our group previously…

Image and Video Processing · Electrical Eng. & Systems 2024-11-27 Lining Yu , Mengmeng Yin , Ruining Deng , Quan Liu , Tianyuan Yao , Can Cui , Junlin Guo , Yu Wang , Yaohong Wang , Shilin Zhao , Haichun Yang , Yuankai Huo

Accurate segmentation of glomerulus instances attains high clinical significance in the automated analysis of renal biopsies to aid in diagnosing and monitoring kidney disease. Analyzing real-world histopathology images often encompasses…

Deep learning has become an extremely powerful tool for complex tasks such as image classification and segmentation. The medical industry often lacks high-quality, balanced datasets, which can be a challenge for deep learning algorithms…

Image and Video Processing · Electrical Eng. & Systems 2024-03-26 Muhammad Shoaib Farooq , Ayesha Tariq

Histopathological image classification constitutes a pivotal task in computer-aided diagnostics. The precise identification and categorization of histopathological images are of paramount significance for early disease detection and…

Computer Vision and Pattern Recognition · Computer Science 2024-07-23 Weiping Ding , Tianyi Zhou , Jiashuang Huang , Shu Jiang , Tao Hou , Chin-Teng Lin

Due to the increasing availability of whole slide scanners facilitating digitization of histopathological tissue, there is a strong demand for the development of computer based image analysis systems. In this work, the focus is on the…

Computer Vision and Pattern Recognition · Computer Science 2020-04-24 Michael Gadermayr , Ann-Kathrin Dombrowski , Barbara Mara Klinkhammer , Peter Boor , Dorit Merhof

The segmentation of kidney layer structures, including cortex, outer stripe, inner stripe, and inner medulla within human kidney whole slide images (WSI) plays an essential role in automated image analysis in renal pathology. However, the…

Image and Video Processing · Electrical Eng. & Systems 2023-09-07 Muhao Liu , Chenyang Qi , Shunxing Bao , Quan Liu , Ruining Deng , Yu Wang , Shilin Zhao , Haichun Yang , Yuankai Huo

Medical image classification is a vital research area that utilizes advanced computational techniques to improve disease diagnosis and treatment planning. Deep learning models, especially Convolutional Neural Networks (CNNs), have…

Image and Video Processing · Electrical Eng. & Systems 2025-02-10 Kiran Sharma , Ziya Uddin , Adarsh Wadal , Dhruv Gupta

Hepatocellular carcinoma (HCC) is the second most frequent cause of malignancy-related death and is one of the diseases with the highest incidence in the world. Because the liver is the only organ in the human body that is supplied by two…

Computer Vision and Pattern Recognition · Computer Science 2019-07-25 Jiechao Ma , Yingqian Chen , Yu Chen , Fengkai Wan , Sumin Xue , Ziping Li , Shiting Feng

We demonstrate a simple and effective automated method for the segmentation of glomeruli from large (~1 gigapixel) histopathological whole-slide images (WSIs) of thin renal tissue sections and biopsies, using an adaptation of the well-known…

Tissues and Organs · Quantitative Biology 2017-09-21 Olivier Simon , Rabi Yacoub , Sanjay Jain , Pinaki Sarder

Vision-language models (VLMs) have shown considerable potential in digital pathology, yet their effectiveness remains limited for fine-grained, disease-specific classification tasks such as distinguishing between glomerular subtypes. The…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Zhenhao Guo , Rachit Saluja , Tianyuan Yao , Quan Liu , Yuankai Huo , Benjamin Liechty , David J. Pisapia , Kenji Ikemura , Mert R. Sabuncu , Yihe Yang , Ruining Deng

Glomerulus detection is a key step in histopathological evaluation of microscopy images of kidneys. However, the task of automatic detection of glomeruli poses challenges due to the disparity in sizes and shapes of glomeruli in renal…

Computer Vision and Pattern Recognition · Computer Science 2016-01-08 Tsuyoshi Kato , Raissa Relator , Hayliang Ngouv , Yoshihiro Hirohashi , Tetsuhiro Kakimoto , Kinya Okada

Constructing a multi-modal automatic classification model based on three types of renal biopsy images can assist pathologists in glomerular multi-disease identification. However, the substantial scale difference between transmission…

Computer Vision and Pattern Recognition · Computer Science 2025-12-18 Kaixing Long , Danyi Weng , Yun Mi , Zhentai Zhang , Yanmeng Lu , Jian Geng , Zhitao Zhou , Liming Zhong , Qianjin Feng , Wei Yang , Lei Cao
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