English
Related papers

Related papers: Autoencoder-based integrative multi-omics data emb…

200 papers

We propose a novel filter for sparse big data, called an integrated autoencoder (IAE), which utilizes auxiliary information to mitigate data sparsity. The proposed model achieves an appropriate balance between prediction accuracy,…

Machine Learning · Computer Science 2019-06-17 Baogui Xin , Wei Peng

Electronic Health Records have become popular sources of data for secondary research, but their use is hampered by the amount of effort it takes to overcome the sparsity, irregularity, and noise that they contain. Modern learning…

Applications · Statistics 2025-02-28 Jacek M. Bajor , Diego A. Mesa , Travis J. Osterman , Thomas A. Lasko

Autoencoders are powerful machine learning models used to compress information from multiple data sources. However, autoencoders, like all artificial neural networks, are often unidentifiable and uninterpretable. This research focuses on…

This paper investigates a novel algorithmic approach to data representation based on kernel methods. Assuming that the observations lie in a Hilbert space X, the introduced Kernel Autoencoder (KAE) is the composition of mappings from…

Machine Learning · Statistics 2020-12-03 Pierre Laforgue , Stephan Clémençon , Florence d'Alché-Buc

Using the information theory, this study provides insights into how the construction of latent space of autoencoder (AE) using deep neural network (DNN) training finds a smooth low-dimensional manifold in the stiff dynamical system. Our…

This paper introduces an algorithm for the detection of change-points and the identification of the corresponding subsequences in transient multivariate time-series data (MTSD). The analysis of such data has become more and more important…

Signal Processing · Electrical Eng. & Systems 2023-04-05 Jonas Köhne , Lars Henning , Clemens Gühmann

Multimodal variational autoencoders (VAEs) aim to capture shared latent representations by integrating information from different data modalities. A significant challenge is accurately inferring representations from any subset of modalities…

Machine Learning · Computer Science 2024-10-16 Yuta Oshima , Masahiro Suzuki , Yutaka Matsuo

Missing data persists as a major barrier to data analysis across numerous applications. Recently, deep generative models have been used for imputation of missing data, motivated by their ability to capture highly non-linear and complex…

Machine Learning · Statistics 2022-10-03 Breeshey Roskams-Hieter , Jude Wells , Sara Wade

Cancer is a complex disease with significant social and economic impact. Advancements in high-throughput molecular assays and the reduced cost for performing high-quality multi-omics measurements have fuelled insights through machine…

Machine Learning · Computer Science 2022-06-28 Pedro Henrique da Costa Avelar , Roman Laddach , Sophia Karagiannis , Min Wu , Sophia Tsoka

Nowadays, multi-sensor technologies are applied in many fields, e.g., Health Care (HC), Human Activity Recognition (HAR), and Industrial Control System (ICS). These sensors can generate a substantial amount of multivariate time-series data.…

Artificial Intelligence · Computer Science 2021-08-03 Yuxin Zhang , Yiqiang Chen , Jindong Wang , Zhiwen Pan

Image classification is a primary task in data analysis where explainable models are crucially demanded in various applications. Although amounts of methods have been proposed to obtain explainable knowledge from the black-box classifiers,…

Computer Vision and Pattern Recognition · Computer Science 2024-12-31 Ruitao Xie , Jingbang Chen , Limai Jiang , Rui Xiao , Yi Pan , Yunpeng Cai

Cancer survival prediction is important for developing personalized treatments and inducing disease-causing mechanisms. Multi-omics data integration is attracting widespread interest in cancer research for providing information for…

Genomics · Quantitative Biology 2022-07-12 Xing Wu , Qiulian Fang

Missing data is a recurrent and challenging problem, especially when using machine learning algorithms for real-world applications. For this reason, missing data imputation has become an active research area, in which recent deep learning…

Machine Learning · Computer Science 2021-07-01 Simon Tihon , Muhammad Usama Javaid , Damien Fourure , Nicolas Posocco , Thomas Peel

Interpretable machine learning is rapidly becoming a crucial tool for scientific discovery. Among existing approaches, variational autoencoders (VAEs) have shown promise in extracting the hidden physical features of some input data, with no…

Masked Image Modeling (MIM) methods, like Masked Autoencoders (MAE), efficiently learn a rich representation of the input. However, for adapting to downstream tasks, they require a sufficient amount of labeled data since their rich features…

Computer Vision and Pattern Recognition · Computer Science 2023-09-15 Johannes Lehner , Benedikt Alkin , Andreas Fürst , Elisabeth Rumetshofer , Lukas Miklautz , Sepp Hochreiter

This paper compares machine learning approaches with different input data formats for the classification of acoustic emission (AE) signals. AE signals are a promising monitoring technique in many structural health monitoring applications.…

Signal Processing · Electrical Eng. & Systems 2025-01-03 Uditha Muthumala , Yuxuan Zhang , Luciano Sebastian Martinez-Rau , Sebastian Bader

Physics-constrained data-driven computing is an emerging computational paradigm that allows simulation of complex materials directly based on material database and bypass the classical constitutive model construction. However, it remains…

Numerical Analysis · Mathematics 2022-09-12 Xiaolong He , Qizhi He , Jiun-Shyan Chen

Accurate fault detection in high-dimensional industrial environments remains a major challenge due to the inherent complexity, noise, and redundancy in sensor data. This paper introduces CLAIRE, i.e., a hybrid end-to-end learning framework…

Machine Learning · Computer Science 2026-03-09 Mohammadhossein Ghahramani , Mengchu Zhou

Finding an interpretable non-redundant representation of real-world data is one of the key problems in Machine Learning. Biological neural networks are known to solve this problem quite well in unsupervised manner, yet unsupervised…

Machine Learning · Computer Science 2020-10-13 Denis Kuzminykh , Laida Kushnareva , Timofey Grigoryev , Alexander Zatolokin

Steered-Mixtures-of-Experts (SMoE) models provide sparse, edge-aware representations, applicable to many use-cases in image processing. This includes denoising, super-resolution and compression of 2D- and higher dimensional pixel data.…

Image and Video Processing · Electrical Eng. & Systems 2022-07-26 Elvira Fleig , Jonas Geistert , Erik Bochinski , Rolf Jongebloed , Thomas Sikora