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Annotation and labeling of images are some of the biggest challenges in applying deep learning to medical data. Current processes are time and cost-intensive and, therefore, a limiting factor for the wide adoption of the technology.…

Computer Vision and Pattern Recognition · Computer Science 2023-04-04 Manuel Zahn , Douglas P. Perrin

Objective: To comparatively evaluate several transformer model architectures at identifying protected health information (PHI) in the i2b2/UTHealth 2014 clinical text de-identification challenge corpus. Methods: The i2b2/UTHealth 2014…

Computation and Language · Computer Science 2022-04-15 Christopher Meaney , Wali Hakimpour , Sumeet Kalia , Rahim Moineddin

Medical image segmentation is crucial in the field of medical imaging, aiding in disease diagnosis and surgical planning. Most established segmentation methods rely on supervised deep learning, in which clean and precise labels are…

Computer Vision and Pattern Recognition · Computer Science 2024-09-27 Jiahua Dong , Yue Zhang , Qiuli Wang , Ruofeng Tong , Shihong Ying , Shaolin Gong , Xuanpu Zhang , Lanfen Lin , Yen-Wei Chen , S. Kevin Zhou

Identifying medication discontinuations in electronic health records (EHRs) is vital for patient safety but is often hindered by information being buried in unstructured notes. This study aims to evaluate the capabilities of advanced…

Computation and Language · Computer Science 2025-11-10 Chong Shao , Douglas Snyder , Chiran Li , Bowen Gu , Kerry Ngan , Chun-Ting Yang , Jiageng Wu , Richard Wyss , Kueiyu Joshua Lin , Jie Yang

Clinical notes often describe the most important aspects of a patient's physiology and are therefore critical to medical research. However, these notes are typically inaccessible to researchers without prior removal of sensitive protected…

Computation and Language · Computer Science 2018-03-08 Willie Boag , Tristan Naumann , Peter Szolovits

Healthcare AI holds the potential to increase patient safety, augment efficiency and improve patient outcomes, yet research is often limited by data access, cohort curation, and tooling for analysis. Collection and translation of electronic…

Software Engineering · Computer Science 2021-12-14 Raphael Y. Cohen , Vesela P. Kovacheva

Free-text clinical notes detail all aspects of patient care and have great potential to facilitate quality improvement and assurance initiatives as well as advance clinical research. However, concerns about patient privacy and…

Computation and Language · Computer Science 2021-02-23 Nicholas Dobbins , David Wayne , Kahyun Lee , Özlem Uzuner , Meliha Yetisgen

Electronic Health Records (EHRs) have become the primary form of medical data-keeping across the United States. Federal law restricts the sharing of any EHR data that contains protected health information (PHI). De-identification, the…

Computation and Language · Computer Science 2021-03-26 Abdullah Ahmed , Adeel Abbasi , Carsten Eickhoff

Background : De-identification of DICOM (Digital Imaging and Communi-cations in Medicine) files is an essential component of medical image research. Personal Identifiable Information (PII) and/or Personal Health Identifying Information…

Computer Vision and Pattern Recognition · Computer Science 2025-08-05 Bufano Michele , Kotter Elmar

Patient notes contain a wealth of information of potentially great interest to medical investigators. However, to protect patients' privacy, Protected Health Information (PHI) must be removed from the patient notes before they can be…

Computation and Language · Computer Science 2016-11-01 Ji Young Lee , Franck Dernoncourt , Ozlem Uzuner , Peter Szolovits

How can we find interpretable, domain-appropriate models of natural phenomena given some complex, raw data such as images? Can we use such models to derive scientific insight from the data? In this paper, we propose some methods for…

Machine Learning · Computer Science 2024-02-06 Christopher J. Soelistyo , Alan R. Lowe

The availability of large amounts of user-provided data has been key to the success of machine learning for many real-world tasks. Recently, an increasing awareness has emerged that users should be given more control about how their data is…

Machine Learning · Computer Science 2021-07-09 Alexandra Peste , Dan Alistarh , Christoph H. Lampert

De-identification of medical images is a critical step to ensure privacy during data sharing in research and clinical settings. The initial step in this process involves detecting Protected Health Information (PHI), which can be found in…

Computer Vision and Pattern Recognition · Computer Science 2025-06-26 Tuan Truong , Ivo M. Baltruschat , Mark Klemens , Grit Werner , Matthias Lenga

Electronic Health Records (EHRs) contain a wealth of patient data; however, the sparsity of EHRs data often presents significant challenges for predictive modeling. Conventional imputation methods inadequately distinguish between real and…

Machine Learning · Computer Science 2025-02-27 Yinghao Zhu , Zixiang Wang , Long He , Shiyun Xie , Xiaochen Zheng , Liantao Ma , Chengwei Pan

Deep neural networks (DNNs) have achieved great success in a wide variety of medical image analysis tasks. However, these achievements indispensably rely on the accurately-annotated datasets. If with the noisy-labeled images, the training…

Computer Vision and Pattern Recognition · Computer Science 2019-01-25 Cheng Xue , Qi Dou , Xueying Shi , Hao Chen , Pheng Ann Heng

The quality of training data is critical to the performance of machine learning models. In this paper, the Error Sensitivity Profile (ESP) is proposed. It quantifies the sensitivity of model performance to errors in a single feature or in…

Machine Learning · Computer Science 2026-04-29 Andrea Maurino

Access to medical imaging and associated text data has the potential to drive major advances in healthcare research and patient outcomes. However, the presence of Protected Health Information (PHI) and Personally Identifiable Information…

Machine Learning · Statistics 2025-08-01 Kyle Naddeo , Nikolas Koutsoubis , Rahul Krish , Ghulam Rasool , Nidhal Bouaynaya , Tony OSullivan , Raj Krish

Removing Personally Identifiable Information (PII) from clinical notes in Electronic Health Records (EHRs) is essential for research and AI development. While Large Language Models (LLMs) are powerful, their high computational costs and the…

Computation and Language · Computer Science 2025-10-23 Prakrithi Shivaprakash , Lekhansh Shukla , Animesh Mukherjee , Prabhat Chand , Pratima Murthy

Despite the success of deep learning methods in medical image segmentation tasks, the human-level performance relies on massive training data with high-quality annotations, which are expensive and time-consuming to collect. The fact is that…

Computer Vision and Pattern Recognition · Computer Science 2021-06-22 Jialin Shi , Ji Wu

Sharing protected health information (PHI) is critical for furthering biomedical research. Before data can be distributed, practitioners often perform deidentification to remove any PHI contained in the text. Contemporary deidentification…

Computation and Language · Computer Science 2024-10-23 John X. Morris , Thomas R. Campion , Sri Laasya Nutheti , Yifan Peng , Akhil Raj , Ramin Zabih , Curtis L. Cole