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Related papers: MolSSI and BioExcel Workflow Workshop 2018 Report

200 papers

Scientific workflows are becoming increasingly popular for compute-intensive and data-intensive scientific applications. The vision and promise of scientific workflows includes rapid, easy workflow design, reuse, scalable execution, and…

Databases · Computer Science 2013-11-26 Víctor Cuevas-Vicenttín , Saumen Dey , Sven Köhler , Sean Riddle , Bertram Ludäscher

The importance of workflows is highlighted by the fact that they have underpinned some of the most significant discoveries of the past decades. Many of these workflows have significant computational, storage, and communication demands, and…

Workflow is a common term used to describe a systematic breakdown of tasks that need to be performed to solve a problem. This concept has found best use in scientific and business applications for streamlining and improving the performance…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-08 Samiya Khan , Kashish Ara Shakil , Mansaf Alam

A computational workflow, also known as workflow, consists of tasks that must be executed in a specific order to attain a specific goal. Often, in fields such as biology, chemistry, physics, and data science, among others, these workflows…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-14 George Papadimitriou , Hongwei Jin , Cong Wang , Rajiv Mayani , Krishnan Raghavan , Anirban Mandal , Prasanna Balaprakash , Ewa Deelman

A workflow describes the entirety of processing steps in an analysis, such as employed in many fields of physics. Workflow management makes the dependencies between individual steps of a workflow and their computational requirements…

Data Analysis, Statistics and Probability · Physics 2023-09-15 Caspar Schmitt , Boyang Yu , Thomas Kuhr

Advances in sequencing techniques have led to exponential growth in biological data, demanding the development of large-scale bioinformatics experiments. Because these experiments are computation- and data-intensive, they require…

Scientific innovation relies on detailed workflows, which include critical steps such as analyzing literature, generating ideas, validating these ideas, interpreting results, and inspiring follow-up research. However, scientific…

Computation and Language · Computer Science 2024-06-11 Xingjian Zhang , Yutong Xie , Jin Huang , Jinge Ma , Zhaoying Pan , Qijia Liu , Ziyang Xiong , Tolga Ergen , Dongsub Shim , Honglak Lee , Qiaozhu Mei

Machine Learning (ML) has already fundamentally changed several businesses. More recently, it has also been profoundly impacting the computational science and engineering domains, like geoscience, climate science, and health science. In…

The term scientific workflow has evolved over the last two decades to encompass a broad range of compositions of interdependent compute tasks and data movements. It has also become an umbrella term for processing in modern scientific…

With the advent of large language models (LLMs), there is a growing interest in applying LLMs to scientific tasks. In this work, we conduct an experimental study to explore applicability of LLMs for configuring, annotating, translating,…

Human-Computer Interaction · Computer Science 2025-10-13 Orcun Yildiz , Tom Peterka

Scientific Workflow Systems (SWSs) are advanced software frameworks that drive modern research by orchestrating complex computational tasks and managing extensive data pipelines. These systems offer a range of essential features, including…

Software Engineering · Computer Science 2025-06-26 Khairul Alam , Banani Roy , Chanchal K. Roy , Kartik Mittal

Advances in robotic automation, high-performance computing (HPC), and artificial intelligence (AI) encourage us to conceive of science factories: large, general-purpose computation- and AI-enabled self-driving laboratories (SDLs) with the…

Growing anthropogenic pressures have increased the need for robust predictive models. Meeting this demand requires approaches that can handle bigger data to yield forecasts that capture the variability and underlying uncertainty of…

Quantitative Methods · Quantitative Biology 2024-08-06 EM Wolkovich , T Jonathan Davies , William D Pearse , Michael Betancourt

Scientific workflows consist of thousands of highly parallelized tasks executed in a distributed environment involving many components. Automatic tracing and investigation of the components' and tasks' performance metrics, traces, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-07-19 Jonathan Bader , Joel Witzke , Soeren Becker , Ansgar Lößer , Fabian Lehmann , Leon Doehler , Anh Duc Vu , Odej Kao

Exascale computers will offer transformative capabilities to combine data-driven and learning-based approaches with traditional simulation applications to accelerate scientific discovery and insight. These software combinations and…

Machine Learning Operations (MLOps) has become increasingly critical as more organisations move ML models into production. However, the growing landscape of MLOps solutions has introduced complexity for practitioners trying to select…

Software Engineering · Computer Science 2026-04-21 Zakkarija Micallef , Keerthiga Rajenthiram , Ilias Gerostathopoulos

The Workflows Community Summit gathered 111 participants from 18 countries to discuss emerging trends and challenges in scientific workflows, focusing on six key areas: time-sensitive workflows, AI-HPC convergence, multi-facility workflows,…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-22 Rafael Ferreira da Silva , Deborah Bard , Kyle Chard , Shaun de Witt , Ian T. Foster , Tom Gibbs , Carole Goble , William Godoy , Johan Gustafsson , Utz-Uwe Haus , Stephen Hudson , Shantenu Jha , Laila Los , Drew Paine , Frédéric Suter , Logan Ward , Sean Wilkinson , Marcos Amaris , Yadu Babuji , Jonathan Bader , Riccardo Balin , Daniel Balouek , Sarah Beecroft , Khalid Belhajjame , Rajat Bhattarai , Wes Brewer , Paul Brunk , Silvina Caino-Lores , Henri Casanova , Daniela Cassol , Jared Coleman , Taina Coleman , Iacopo Colonnelli , Anderson Andrei Da Silva , Daniel de Oliveira , Pascal Elahi , Nour Elfaramawy , Wael Elwasif , Brian Etz , Thomas Fahringer , Wesley Ferreira , Rosa Filgueira , Jacob Fosso Tande , Luiz Gadelha , Andy Gallo , Daniel Garijo , Yiannis Georgiou , Philipp Gritsch , Patricia Grubel , Amal Gueroudji , Quentin Guilloteau , Carlo Hamalainen , Rolando Hong Enriquez , Lauren Huet , Kevin Hunter Kesling , Paula Iborra , Shiva Jahangiri , Jan Janssen , Joe Jordan , Sehrish Kanwal , Liliane Kunstmann , Fabian Lehmann , Ulf Leser , Chen Li , Peini Liu , Jakob Luettgau , Richard Lupat , Jose M. Fernandez , Ketan Maheshwari , Tanu Malik , Jack Marquez , Motohiko Matsuda , Doriana Medic , Somayeh Mohammadi , Alberto Mulone , John-Luke Navarro , Kin Wai Ng , Klaus Noelp , Bruno P. Kinoshita , Ryan Prout , Michael R. Crusoe , Sashko Ristov , Stefan Robila , Daniel Rosendo , Billy Rowell , Jedrzej Rybicki , Hector Sanchez , Nishant Saurabh , Sumit Kumar Saurav , Tom Scogland , Dinindu Senanayake , Woong Shin , Raul Sirvent , Tyler Skluzacek , Barry Sly-Delgado , Stian Soiland-Reyes , Abel Souza , Renan Souza , Domenico Talia , Nathan Tallent , Lauritz Thamsen , Mikhail Titov , Benjamin Tovar , Karan Vahi , Eric Vardar-Irrgang , Edite Vartina , Yuandou Wang , Merridee Wouters , Qi Yu , Ziad Al Bkhetan , Mahnoor Zulfiqar

Inferences about hypotheses are ubiquitous in the cognitive sciences. Bayes factors provide one general way to compare different hypotheses by their compatibility with the observed data. Those quantifications can then also be used to choose…

Science advances not only through the accumulation of facts but also through the evolution of tools. Crucially, tools are rarely used in isolation. They form tool portfolios, combinations shaped by a discipline's workflows and analytical…

Digital Libraries · Computer Science 2026-04-28 Zhouming Wu , Dakota Murray

Challenges related to development, deployment, and maintenance of reusable software for science are becoming a growing concern. Many scientists' research increasingly depends on the quality and availability of software upon which their…