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A challenge in high-dimensional inverse problems is developing iterative solvers to find the accurate solution of regularized optimization problems with low computational cost. An important example is computed tomography (CT) where both…

Numerical Analysis · Mathematics 2024-12-16 Alessandro Perelli , Carola-Bibiane Schonlieb , Matthias J. Ehrhardt

An efficient computational approach for optimal reconstructing parameters of binary-type physical properties for models in biomedical applications is developed and validated. The methodology includes gradient-based multiscale optimization…

Computational Physics · Physics 2020-12-24 Priscilla M. Koolman , Vladislav Bukshtynov

We present a filtered backprojection algorithm for reconstructing the Wigner function of a system of large angular momentum j from Stern-Gerlach-type measurements. Our method is advantageous over the full determination of the density matrix…

Quantum Physics · Physics 2015-03-17 Roman Schmied , Philipp Treutlein

Quantitative imaging in MRI usually involves acquisition and reconstruction of a series of images at multi-echo time points, which possibly requires more scan time and specific reconstruction technique compared to conventional qualitative…

Signal Processing · Electrical Eng. & Systems 2021-03-11 Jinwei Zhang , Hang Zhang , Chao Li , Pascal Spincemaille , Mert Sabuncu , Thanh D. Nguyen , Yi Wang

We investigate a stochastic approach to non-equilibrium quantum spin systems based on recent insights linking quantum and classical dynamics. Exploiting a sequence of exact transformations, quantum expectation values can be recast as…

Statistical Mechanics · Physics 2019-01-31 S. De Nicola , B. Doyon , M. J. Bhaseen

Parallel imaging techniques reduce magnetic resonance imaging (MRI) scan time but image quality degrades as the acceleration factor increases. In clinical practice, conservative acceleration factors are chosen because no mechanism exists to…

Image and Video Processing · Electrical Eng. & Systems 2026-05-26 Ilias I. Giannakopoulos , Lokesh B Gautham Muthukumar , Yvonne W. Lui , Riccardo Lattanzi

Quantum systems have shown great promise for precision metrology thanks to advances in their control. This has allowed not only the sensitive estimation of external parameters but also the reconstruction of their temporal profile. In…

Quantum Physics · Physics 2014-03-20 Easwar Magesan , Alexandre Cooper , Honam Yum , Paola Cappellaro

A novel and highly efficient computational framework for reconstructing binary-type images suitable for models of various complexity seen in diverse biomedical applications is developed and validated. Efficiency in computational speed and…

Optimization and Control · Mathematics 2024-02-09 Paul R. Arbic , Vladislav Bukshtynov

Inferring biophysical parameters and hidden state variables from partial and noisy observations is a fundamental challenge in computational neuroscience. This problem is particularly difficult for fast - slow spiking and bursting models,…

Neural and Evolutionary Computing · Computer Science 2026-03-11 Changliang Wei , Yangyang Wang , Xueyu Zhu

A robust algorithm is proposed to reconstruct the spatial support and the Lam\'e parameters of multiple inclusions in a homogeneous background elastic material using a few measurements of the displacement field over a finite collection of…

Numerical Analysis · Mathematics 2017-02-27 Jaejun Yoo , Younghoon Jung , Mikyoung Lim , Jong Chul Ye , Abdul Wahab

Purpose: To develop a self-supervised scan-specific deep learning framework for reconstructing accelerated multiparametric quantitative MRI (qMRI). Methods: We propose REFINE-MORE (REference-Free Implicit NEural representation with MOdel…

Medical Physics · Physics 2025-08-05 Ruimin Feng , Albert Jang , Xingxin He , Fang Liu

We present a foundation model for brain MRI that can work with different combinations of imaging sequences. The model uses one encoder with learnable modality embeddings, conditional layer normalization, and a masked autoencoding objective…

Computer Vision and Pattern Recognition · Computer Science 2025-11-06 Minh Sao Khue Luu , Bair N. Tuchinov

The numerical simulation of the diffusion MRI signal arising from complex tissue micro-structures is helpful for understanding and interpreting imaging data as well as for designing and optimizing MRI sequences. The discretization of the…

Computational Engineering, Finance, and Science · Computer Science 2019-10-23 Van-Dang Nguyen , Massimiliano Leoni , Tamara Dancheva , Johan Jansson , Johan Hoffman , Demian Wassermann , Jing-Rebecca Li

We develop a mathematical and numerical framework to solve state estimation problems for applications that present variations in the shape of the spatial domain. This situation arises typically in a biomedical context where inverse problems…

Numerical Analysis · Mathematics 2023-03-14 Felipe Galarce , Damiano Lombardi , Olga Mula

Goal: This work aims at developing a novel calibration-free fast parallel MRI (pMRI) reconstruction method incorporate with discrete-time optimal control framework. The reconstruction model is designed to learn a regularization that…

Image and Video Processing · Electrical Eng. & Systems 2022-01-25 Wanyu Bian , Yunmei Chen , Xiaojing Ye

In this paper, we develop a novel mesh-free framework, termed physics-informed neural networks with invariant measure score matching (PINN-IMSM), for reconstructing dynamical systems from unlabeled point-cloud data that capture the system's…

Numerical Analysis · Mathematics 2026-01-21 Yongsheng Chen , Suddhasattwa Das , Wei Guo , Xinghui Zhong

Fast Iterative Shrinking-Threshold Algorithm (FISTA) is a popular fast gradient descent method (FGM) in the field of large scale convex optimization problems. However, it can exhibit undesirable periodic oscillatory behaviour in some…

Optimization and Control · Mathematics 2019-12-30 Teodoro Alamo , Pablo Krupa , Daniel Limon

Purpose: Pushing MRI speed further demands more spatially-encoded information captured per unit time, e.g., by superimposing additional field modulations during oversampled readout. However, this can introduce calibration errors and…

Medical Physics · Physics 2026-01-12 Rui Tian , Martin Uecker , Oliver Holder , Pavel Povolni , Theodor Steffen , Klaus Scheffler

We build a general quantum state tomography framework that makes use of machine learning techniques to reconstruct quantum states from a given set of coincidence measurements. For a wide range of pure and mixed input states we demonstrate…

Quantum Physics · Physics 2020-06-09 Sanjaya Lohani , Brian T. Kirby , Michael Brodsky , Onur Danaci , Ryan T. Glasser

Quantitative MR imaging is increasingly favoured for its richer information content and standardised measures. However, computing quantitative parameter maps, such as those encoding longitudinal relaxation rate (R1), apparent transverse…

Computer Vision and Pattern Recognition · Computer Science 2021-07-01 Yael Balbastre , Mikael Brudfors , Michela Azzarito , Christian Lambert , Martina F. Callaghan , John Ashburner