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Evaluating the (dis)similarity of crystalline, disordered and molecular compounds is a critical step in the development of algorithms to navigate automatically the configuration space of complex materials. For instance, a structural…

Materials Science · Physics 2020-02-06 Sandip De , Albert P. Bartók , Gábor Csányi , Michele Ceriotti

The use of machine learning is becoming increasingly common in computational materials science. To build effective models of the chemistry of materials, useful machine-based representations of atoms and their compounds are required. We…

Materials Science · Physics 2021-08-02 Luis M. Antunes , Ricardo Grau-Crespo , Keith T. Butler

One of the long-standing problems in materials science is how to predict a material's structure and then its properties given only its composition. Experimental characterization of crystal structures has been widely used for structure…

Materials Science · Physics 2022-03-29 Rongzhi Dong , Yong Zhao , Yuqi Song , Nihang Fu , Sadman Sadeed Omee , Sourin Dey , Qinyang Li , Lai Wei , Jianjun Hu

Scanning transmission electron microscopy is a common tool used to study the atomic structure of materials. It is an inherently multimodal tool allowing for the simultaneous acquisition of multiple information channels. Despite its…

We explore data reduction and correction steps and processed data reproducibility in the emerging single crystal total scattering based technique of three-dimensional differential atomic pair distribution function (3D-$\Delta$PDF) analysis.…

Many crystalline materials show chemical short range order and relaxation of neighboring atoms. Local structural information can be obtained by analyzing the atomic pair distribution function (PDF) obtained from powder diffraction data. In…

Materials Science · Physics 2007-05-23 Th. Proffen , V. Petkov , S. J. L. Billinge , T. Vogt

If two probability density functions (PDFs) have values for their first $n$ moments which are quite close to each other (upper bounds of their differences are known), can it be expected that the PDFs themselves are very similar? Shown below…

Statistics Theory · Mathematics 2018-08-16 Pranava Chaitanya Jayanti , Konstantina Trivisa

The fundamental relationship of the atomic structure (represented by its atomic property parameters, APPs) and its physical properties of a specific inorganic substance can be realized in the bottom-up data-centric and the top-down…

Materials Science · Physics 2021-05-28 Pierre Villars , Evgeny Blokhin , Shuichi Iwata

This paper offers a new authentication algorithm based on image matching of nano-resolution visual identifiers with tree-shaped patterns. The algorithm includes image-to-tree conversion by greedy extraction of the fractal pattern skeleton…

Computer Vision and Pattern Recognition · Computer Science 2022-11-16 Hao Wang , Xiwen Chen , Abolfazl Razi , Rahul Amin

Generative AI models, such as score-based diffusion models, have recently advanced the field of computational materials science by enabling the generation of new materials with desired properties. In addition, these models could also be…

Materials Science · Physics 2026-01-06 Timo Reents , Arianna Cantarella , Marnik Bercx , Pietro Bonfà , Giovanni Pizzi

A computational method is presented which is capable to obtain low lying energy structures of topological amorphous systems. The method merges a differential mutation genetic algorithm with simulated annealing. This is done by incorporating…

Computational Physics · Physics 2017-10-11 Katja Biswas

Complex networks provide a powerful mathematical representation of complex systems in nature and society. To understand complex networks, it is crucial to explore their internal structures, also called structural regularities. The task of…

Social and Information Networks · Computer Science 2015-12-02 Yi Chen , Xiao-long Wang , Xin Xiang , Bu-zhou Tang , Qing-cai Chen , Bo Yuan , Jun-zhao Bu

Substructure search in chemical compound databases is a fundamental task in cheminformatics with critical implications for fields such as drug discovery, materials science, and toxicology. However, the increasing size and complexity of…

Databases · Computer Science 2023-10-04 Vsevolod Vaskin , Dmitri Jakovlev , Fedor Bakharev

Structure-informed materials informatics is a rapidly evolving discipline of materials science relying on the featurization of atomic structures or configurations to construct vector, voxel, graph, graphlet, and other representations useful…

Materials Science · Physics 2024-12-17 Adam M. Krajewski , Jonathan W. Siegel , Zi-Kui Liu

Model cards describe model behavior through a mixture of textual descriptions and structured artifacts, including performance, configuration, and dataset tables. Existing model search systems rely predominantly on semantic similarity over…

Information Retrieval · Computer Science 2026-05-22 Zhengyuan Dong , Renée J. Miller

We present an alternative algorithm to global fitting procedures to construct Parton Distribution Functions (PDFs) parametrizations. The proposed algorithm uses Self-Organizing Maps (SOMs) which at variance with the standard Neural…

High Energy Physics - Phenomenology · Physics 2017-08-23 H. Honkanen , S. Liuti , Y. C. Loitiere , D. Brogan , P. Reynolds

The field of complex self-assembly is moving toward the design of multi-particle structures consisting of thousands of distinct building blocks. To exploit the potential benefits of structures with such `addressable complexity,' we need to…

Soft Condensed Matter · Physics 2015-06-02 William M. Jacobs , Aleks Reinhardt , Daan Frenkel

Form understanding depends on both textual contents and organizational structure. Although modern OCR performs well, it is still challenging to realize general form understanding because forms are commonly used and of various formats. The…

Computer Vision and Pattern Recognition · Computer Science 2020-10-23 Zilong Wang , Mingjie Zhan , Xuebo Liu , Ding Liang

We present work flows and a software module for machine learning model building in surface science and heterogeneous catalysis. This includes fingerprinting atomic structures from 3D structure and/or connectivity information, it includes…

Much algorithmic research in NLP aims to efficiently manipulate rich formal structures. An algorithm designer typically seeks to provide guarantees about their proposed algorithm -- for example, that its running time or space complexity is…

Programming Languages · Computer Science 2025-12-30 Tim Vieira , Ryan Cotterell , Jason Eisner
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