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With the advent of high-throughput sequencing (HTS) in molecular biology and medicine, the need for scalable statistical solutions for modeling complex biological systems has become of critical importance. The increasing number of platforms…

Molecular Networks · Quantitative Biology 2022-10-19 Fernando Palluzzi , Mario Grassi

Community structure is a key feature omnipresent in real-world network data. Plethora of methods have been proposed to reveal subsets of densely interconnected nodes using criteria such as the modularity index. These approaches have been…

Social and Information Networks · Computer Science 2026-01-21 Alexandre Cionca , Chun Hei Michael Chan , Dimitri Van De Ville

This paper describes and illustrates the functionality of the baker R package. The package estimates a suite of nested partially-latent class models (NPLCM) for multivariate binary responses that are observed under a case-control design.…

Methodology · Statistics 2022-02-25 Irena B Chen , Qiyuan Shi , Scott L Zeger , Zhenke Wu

Community detection in social networks is a problem with considerable interest, since, discovering communities reveals hidden information about networks. There exist many algorithms to detect inherent community structures and recently few…

Social and Information Networks · Computer Science 2019-11-21 Waqas Nawaz

Graphs are widely used in various fields of computer science. They have also found application in unrelated areas, leading to a diverse range of problems. These problems can be modeled as relationships between entities in various contexts,…

Data Structures and Algorithms · Computer Science 2024-05-20 Davide Rucci

Community detection in networks is one of the most popular topics of modern network science. Communities, or clusters, are usually groups of vertices having higher probability of being connected to each other than to members of other…

Physics and Society · Physics 2016-11-04 Santo Fortunato , Darko Hric

The analysis of multilayer networks is among the most active areas of network science, and there are now several methods to detect dense "communities" of nodes in multilayer networks. One way to define a community is as a set of nodes that…

Social and Information Networks · Computer Science 2016-05-24 Lucas G. S. Jeub , Michael W. Mahoney , Peter J. Mucha , Mason A. Porter

Last year has witnessed the considerable interest of Large Language Models (LLMs) for their potential applications in recommender systems, which may mitigate the persistent issue of data sparsity. Though large efforts have been made for…

Information Retrieval · Computer Science 2024-05-14 Ziwei Zhao , Fake Lin , Xi Zhu , Zhi Zheng , Tong Xu , Shitian Shen , Xueying Li , Zikai Yin , Enhong Chen

Researchers, policy makers, and engineers need to make sense of data from spreading processes as diverse as rumor spreading in social networks, viral infections, and water contamination. Classical questions include predicting infection…

Data Structures and Algorithms · Computer Science 2026-01-08 Ben Bals , Michelle Döring , Nicolas Klodt , George Skretas

Sarcasm detection is an important task in affective computing, requiring large amounts of labeled data. We introduce reactive supervision, a novel data collection method that utilizes the dynamics of online conversations to overcome the…

Computation and Language · Computer Science 2023-09-07 Boaz Shmueli , Lun-Wei Ku , Soumya Ray

Inspired by the increasing interest in self-organizing social opportunistic networks, we investigate the problem of distributed detection of unknown communities in dynamic random graphs. As a formal framework, we consider the dynamic…

Social and Information Networks · Computer Science 2014-07-10 Andrea Clementi , Miriam di Ianni , Giorgio Gambosi , Emanuele Natale , Riccardo Silvestri

Many networks are important because they are substrates for dynamical systems, and their pattern of functional connectivity can itself be dynamic -- they can functionally reorganize, even if their underlying anatomical structure remains…

Neurons and Cognition · Quantitative Biology 2010-04-21 Cosma Rohilla Shalizi , Marcelo F. Camperi , Kristina Lisa Klinkner

In many complex systems, networks and graphs arise in a natural manner. Often, time evolving behavior can be easily found and modeled using time-series methodology. Amongst others, two common research problems in network analysis are…

Social and Information Networks · Computer Science 2020-07-02 Rex C. Y. Cheung , Alexander Aue , Seungyong Hwang , Thomas C. M. Lee

Community detection in Social Networks is associated with finding and grouping the most similar nodes inherent in the network. These similar nodes are identified by computing tie strength. Stronger ties indicates higher proximity shared by…

Social and Information Networks · Computer Science 2022-12-22 Soumita Das , Anupam Biswas , Akrati Saxena

Community is a universal structure in various complex networks, and community detection is a fundamental task for network analysis. With the rapid growth of network scale, networks are massive, changing rapidly and could naturally be…

Social and Information Networks · Computer Science 2021-10-29 Yanhao Yang , Meng Wang , David Bindel , Kun He

Networks or graphs are widely used across the sciences to represent relationships of many kinds. igraph (https://igraph.org) is a general-purpose software library for graph construction, analysis, and visualisation, combining fast and…

Social relationships can be divided into different classes based on the regularity with which they occur and the similarity among them. Thus, rare and somewhat similar relationships are random and cause noise in a social network, thus…

Social and Information Networks · Computer Science 2018-10-08 Jeancarlo Campos Leão , Michele Amaral Brandão , Pedro O. S. Vaz de Melo , Alberto H. F. Laender

Due to their flexibility and superior performance, machine learning models frequently complement and outperform traditional statistical survival models. However, their widespread adoption is hindered by a lack of user-friendly tools to…

Uncovering the community structure exhibited by real networks is a crucial step towards an understanding of complex systems that goes beyond the local organization of their constituents. Many algorithms have been proposed so far, but none…

Physics and Society · Physics 2010-09-17 Andrea Lancichinetti , Santo Fortunato

We developed DyGETViz, a novel framework for effectively visualizing dynamic graphs (DGs) that are ubiquitous across diverse real-world systems. This framework leverages recent advancements in discrete-time dynamic graph (DTDG) models to…

Machine Learning · Computer Science 2024-07-01 Yiqiao Jin , Andrew Zhao , Yeon-Chang Lee , Meng Ye , Ajay Divakaran , Srijan Kumar