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Automated annotation of clinical text with standardized medical concepts is critical for enabling structured data extraction and decision support. SNOMED CT provides a rich ontology for labeling clinical entities, but manual annotation is…

Computation and Language · Computer Science 2025-08-05 Ali Noori , Pratik Devkota , Somya Mohanty , Prashanti Manda

Existing interactive segmentation methods leverage automatic segmentation and user interactions for label refinement, significantly reducing the annotation workload compared to manual annotation. However, these methods lack quick…

Image and Video Processing · Electrical Eng. & Systems 2023-10-06 Muhammad Asad , Helena Williams , Indrajeet Mandal , Sarim Ather , Jan Deprest , Jan D'hooge , Tom Vercauteren

Image annotation is one of the most essential tasks for guaranteeing proper treatment for patients and tracking progress over the course of therapy in the field of medical imaging and disease diagnosis. However, manually annotating a lot of…

Computer Vision and Pattern Recognition · Computer Science 2024-03-25 Md Abdul Kadir , Hasan Md Tusfiqur Alam , Pascale Maul , Hans-Jürgen Profitlich , Moritz Wolf , Daniel Sonntag

Automated CT report generation plays a crucial role in improving diagnostic accuracy and clinical workflow efficiency. However, existing methods lack interpretability and impede patient-clinician understanding, while their static nature…

Image and Video Processing · Electrical Eng. & Systems 2025-03-06 Yannian Gu , Wenhui Lei , Hanyu Chen , Xiaofan Zhang , Shaoting Zhang

Automated segmentation of medical images heavily relies on the availability of precise manual annotations. However, generating these annotations is often time-consuming, expensive, and sometimes requires specialized expertise (especially…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Yixin Zhang , Kevin Kramer , Maciej A. Mazurowski

Purpose AI-based methods for anatomy segmentation can help automate characterization of large imaging datasets. The growing number of similar in functionality models raises the challenge of evaluating them on datasets that do not contain…

Machine learning-based segmentation in medical imaging is widely used in clinical applications from diagnostics to radiotherapy treatment planning. Segmented medical images with ground truth are useful for investigating the properties of…

Image and Video Processing · Electrical Eng. & Systems 2023-01-02 Shuyue Guan , Ravi K. Samala , Weijie Chen

A method for automatically quantifying emphysema regions using High-Resolution Computed Tomography (HRCT) scans of patients with chronic obstructive pulmonary disease (COPD) that does not require manually annotated scans for training is…

Computer Vision and Pattern Recognition · Computer Science 2018-11-21 Isabel Pino Peña , Veronika Cheplygina , Sofia Paschaloudi , Morten Vuust , Jesper Carl , Ulla Møller Weinreich , Lasse Riis Østergaard , Marleen de Bruijne

Purpose: Segmentation of surgical instruments in endoscopic videos is essential for automated surgical scene understanding and process modeling. However, relying on fully supervised deep learning for this task is challenging because manual…

Computer Vision and Pattern Recognition · Computer Science 2021-03-03 Manish Sahu , Anirban Mukhopadhyay , Stefan Zachow

Automatic segmentation of organs-at-risk (OARs) in CT scans using convolutional neural networks (CNNs) is being introduced into the radiotherapy workflow. However, these segmentations still require manual editing and approval by clinicians…

Computer Vision and Pattern Recognition · Computer Science 2022-06-28 Edward G. A. Henderson , Andrew F. Green , Marcel van Herk , Eliana M. Vasquez Osorio

Organ-at-risk contouring is still a bottleneck in radiotherapy, with many deep learning methods falling short of promised results when evaluated on clinical data. We investigate the accuracy and time-savings resulting from the use of an…

Computer Vision and Pattern Recognition · Computer Science 2022-04-06 Abraham George Smith , Jens Petersen , Cynthia Terrones-Campos , Anne Kiil Berthelsen , Nora Jarrett Forbes , Sune Darkner , Lena Specht , Ivan Richter Vogelius

Within this thesis we propose a platform for combining Augmented Reality (AR) hardware with machine learning in a user-oriented pipeline, offering to the medical staff an intuitive 3D visualization of volumetric Computed Tomography (CT) and…

Computer Vision and Pattern Recognition · Computer Science 2018-08-16 Lucian Trestioreanu

Segmentation of anatomical structures is a fundamental image analysis task for many applications in the medical field. Deep learning methods have been shown to perform well, but for this purpose large numbers of manual annotations are…

Computer Vision and Pattern Recognition · Computer Science 2019-12-24 Firat Ozdemir , Zixuan Peng , Philipp Fuernstahl , Christine Tanner , Orcun Goksel

Recent advances of 3D acquisition devices have enabled large-scale acquisition of 3D scene data. Such data, if completely and well annotated, can serve as useful ingredients for a wide spectrum of computer vision and graphics works such as…

Computer Vision and Pattern Recognition · Computer Science 2016-10-20 Duc Thanh Nguyen , Binh-Son Hua , Lap-Fai Yu , Sai-Kit Yeung

Intensive care units (ICUs) are complex and data-rich environments. Data routinely collected in the ICUs provides tremendous opportunities for machine learning, but their use comes with significant challenges. Complex problems may require…

Human-Computer Interaction · Computer Science 2024-06-05 Marceli Wac , Raul Santos-Rodriguez , Chris McWilliams , Christopher Bourdeaux

Brain MR image segmentation is a key task in neuroimaging studies. It is commonly conducted using standard computational tools, such as FSL, SPM, multi-atlas segmentation etc, which are often registration-based and suffer from expensive…

Image and Video Processing · Electrical Eng. & Systems 2019-08-29 Chengliang Dai , Yuanhan Mo , Elsa Angelini , Yike Guo , Wenjia Bai

A major challenge in the segmentation of medical images is the large inter- and intra-observer variability in annotations provided by multiple experts. To address this challenge, we propose a novel method for multi-expert prediction using…

Image and Video Processing · Electrical Eng. & Systems 2023-06-16 Tomer Amit , Shmuel Shichrur , Tal Shaharabany , Lior Wolf

Despite growing interest in using large language models (LLMs) to automate annotation, their effectiveness in complex, nuanced, and multi-dimensional labelling tasks remains relatively underexplored. This study focuses on annotation for the…

Information Retrieval · Computer Science 2025-07-02 Leila Tavakoli , Hamed Zamani

Properly annotated multimedia content is crucial for supporting advances in many Information Retrieval applications. It enables, for instance, the development of automatic tools for the annotation of large and diverse multimedia…

Information Retrieval · Computer Science 2018-11-28 Xavier Favory , Eduardo Fonseca , Frederic Font , Xavier Serra
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