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Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology studies the evolution of topological features in terms of a…

Quantitative Methods · Quantitative Biology 2017-08-01 Pavel Petrov , Stephen T Rush , Zhichun Zhai , Christine H Lee , Peter T Kim , Giseon Heo

For nearly three decades, spatial games have produced a wealth of insights to the study of behavior and its relation to population structure. However, as different rules and factors are added or altered, the dynamics of spatial models often…

Computer Science and Game Theory · Computer Science 2021-09-30 Jakob Stenseke

Topological Data Analysis has grown in popularity in recent years as a way to apply tools from algebraic topology to large data sets. One of the main tools in topological data analysis is persistent homology. This paper uses undergraduate…

Algebraic Topology · Mathematics 2024-06-26 Cheyne Glass , Elizabeth Vidaurre

Persistent homology is a popular data analysis technique that is used to capture the changing topology of a filtration associated with some simplicial complex $K$. These topological changes are summarized in persistence diagrams. We propose…

Computational Geometry · Computer Science 2018-10-11 Tamal K. Dey , Ryan Slechta

The Persistent Homology Transform (PHT) was introduced in the field of Topological Data Analysis about 10 years ago, and has since been proven to be a very powerful descriptor of Euclidean shapes. The PHT consists of scanning a shape from…

Algebraic Topology · Mathematics 2024-12-25 Adam Onus , Nina Otter , Renata Turkes

Persistent topological Laplacians constitute a new class of tools in topological data analysis (TDA). They are motivated by the necessity to address challenges encountered in persistent homology when handling complex data. These Laplacians…

Algebraic Topology · Mathematics 2024-12-12 Xiaoqi Wei , Guo-Wei Wei

This paper presents a mathematically rigorous framework for brain-inspired representation learning founded on the interplay between persistent topological structures and cohomological flows. Neural computation is reformulated as the…

Machine Learning · Computer Science 2025-12-10 Preksha Girish , Rachana Mysore , Mahanthesha U , Shrey Kumar , Shipra Prashant

Laplacian-based methods are popular for the dimensionality reduction of data lying in $\mathbb{R}^N$. Several theoretical results for these algorithms depend on the fact that the Euclidean distance locally approximates the geodesic distance…

Machine Learning · Computer Science 2025-09-24 Liane Xu , Amit Singer

Topological correctness is critical for segmentation of tubular structures, which pervade in biomedical images. Existing topological segmentation loss functions are primarily based on the persistent homology of the image. They match the…

Computer Vision and Pattern Recognition · Computer Science 2025-10-29 Bo Wen , Haochen Zhang , Dirk-Uwe G. Bartsch , William R. Freeman , Truong Q. Nguyen , Cheolhong An

Persistent Topology studies topological features of shapes by analyzing the lower level sets of suitable functions, called filtering functions, and encoding the arising information in a parameterized version of the Betti numbers, i.e. the…

Algebraic Topology · Mathematics 2010-05-05 Andrea Cerri , Patrizio Frosini

Persistent homology analysis, a recently developed computational method in algebraic topology, is applied to the study of the phase transitions undergone by the so-called XY-mean field model and by the phi^4 lattice model, respectively. For…

Exploring the relationship between geometry and the resonant frequencies of a shape is of interest to pure and applied mathematicians. These resonant frequencies are related to the spectrum of the Laplacian, a partial differential operator.…

Spectral Theory · Mathematics 2018-08-23 Neal Coleman

Despite high-dimensionality of images, the sets of images of 3D objects have long been hypothesized to form low-dimensional manifolds. What is the nature of such manifolds? How do they differ across objects and object classes? Answering…

Computer Vision and Pattern Recognition · Computer Science 2025-03-11 Benjamin Beaudett , Shenyuan Liang , Anuj Srivastava

Given an unknown $\mathbb{R}^n$-valued function $f$ on a metric space $X$, can we approximate the persistent homology of $f$ from a finite sampling of $X$ with known pairwise distances and function values? This question has been answered in…

Algebraic Topology · Mathematics 2026-03-20 Ethan André , Jingyi Li , David Loiseaux , Steve Oudot

This article aims to study the topological invariant properties encoded in node graph representational embeddings by utilizing tools available in persistent homology. Specifically, given a node embedding representation algorithm, we…

Machine Learning · Computer Science 2021-10-12 Mustafa Hajij , Ghada Zamzmi , Xuanting Cai

The robustness of manifold learning methods is often predicated on the stability of the Neumann Laplacian eigenfunctions under deformations of the assumed underlying domain. Indeed, many manifold learning methods are based on approximating…

Spectral Theory · Mathematics 2022-03-02 Nicholas F. Marshall

We discuss the geometry of Laplacian eigenfunctions $-\Delta \phi = \lambda \phi$ on compact manifolds $(M,g)$ and combinatorial graphs $G=(V,E)$. The 'dual' geometry of Laplacian eigenfunctions is well understood on $\mathbb{T}^d$…

Signal Processing · Electrical Eng. & Systems 2018-04-27 Alexander Cloninger , Stefan Steinerberger

Persistent homology, a method from topological data analysis, extracts robust, multi-scale features from data. It produces stable representations of time series by applying varying thresholds to their values (a process known as a…

Computation and Language · Computer Science 2026-04-24 Marius Huber , David R. Reich , Lena A. Jäger

Persistent Homology is a fairly new branch of Computational Topology which combines geometry and topology for an effective shape description of use in Pattern Recognition. In particular it registers through "Betti Numbers" the presence of…

Quantitative Methods · Quantitative Biology 2016-06-01 Massimo Ferri , Ivan Tomba , Andrea Visotti , Ignazio Stanganelli

Classical shape descriptors such as Heat Kernel Signature (HKS), Wave Kernel Signature (WKS), and Signature of Histograms of OrienTations (SHOT), while widely used in shape analysis, exhibit sensitivity to mesh connectivity, sampling…

Computer Vision and Pattern Recognition · Computer Science 2025-03-07 Gal Yona , Roy Velich , Ron Kimmel , Ehud Rivlin