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The rapid evolution of artificial intelligence in drug discovery encounters challenges with generalization and extensive training, yet Large Language Models (LLMs) offer promise in reshaping interactions with complex molecular data. Our…

Biomolecules · Quantitative Biology 2024-12-20 He Cao , Zijing Liu , Xingyu Lu , Yuan Yao , Yu Li

There are many ways to represent a molecule as input to a machine learning model and each is associated with loss and retention of certain kinds of information. In the interest of preserving three-dimensional spatial information, including…

Machine Learning · Computer Science 2019-12-11 Jocelyn Sunseri , David Ryan Koes

Large language models (LLMs) have demonstrated broad utility across molecular domains, spanning drug discovery and materials design. Analyzing LLMs' latent representations is crucial for elucidating their underlying mechanisms, improving…

Machine Learning · Computer Science 2026-02-03 Zhuoran Li , Xu Sun , Wanyu Lin , Jiannong Cao

Large Language Models (LLMs) have recently demonstrated remarkable performance in various Natural Language Processing (NLP) applications, such as sentiment analysis, content generation, and personalized recommendations. Despite their…

Computation and Language · Computer Science 2024-12-10 Mahaman Sanoussi Yahaya Alassan , Jessica López Espejel , Merieme Bouhandi , Walid Dahhane , El Hassane Ettifouri

Machine learning (ML) empowers biomedical systems with the capability to optimize their performance through modeling of the available data extremely well, without using strong assumptions about the modeled system. Especially in nano-scale…

Leading models for the text-to-SQL task heavily rely on proprietary Large Language Models (LLMs), posing concerns over data privacy. Closing the performance gap between small open-source models and large proprietary models is crucial to…

Computation and Language · Computer Science 2024-02-05 Mohammadreza Pourreza , Davood Rafiei

For a medical diagnosis, health professionals use different kinds of pathological ways to make a decision for medical reports in terms of patients medical condition. In the modern era, because of the advantage of computers and technologies,…

Machine Learning · Statistics 2021-06-08 Fahad B. Mostafa , Md Easin Hasan

Spatial (dataflow) computer architectures can mitigate the control and performance overhead of classical von Neumann architectures such as traditional CPUs. Driven by the popularity of Machine Learning (ML) workloads, spatial devices are…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-02 Tristan Laan , Tiziano De Matteis

Machine learning models deployed on edge devices have enabled numerous exciting new applications, such as humanoid robots, AR glasses, and autonomous vehicles. However, the computing resources available on these edge devices are not…

Machine Learning · Computer Science 2024-11-15 Jinjie Liu , Hang Qiu

This paper introduces a novel framework for designing efficient neural network architectures specifically tailored to tiny machine learning (TinyML) platforms. By leveraging large language models (LLMs) for neural architecture search (NAS),…

Machine Learning · Computer Science 2025-04-15 Christophe El Zeinaty , Wassim Hamidouche , Glenn Herrou , Daniel Menard , Merouane Debbah

We present PackLib^2, the first fully integrated benchmark library for multi-dimensional packing instances. PackLib^2 combines a systematic collection of all benchmark instances from previous literature with a well-organized set of new and…

Optimization and Control · Mathematics 2007-05-23 Sandor P. Fekete , Jan van der Veen

Machine learning solutions are very popular in the field of chemoinformatics, where they have numerous applications, such as novel drug discovery or molecular property prediction. Molecular fingerprints are algorithms commonly used for…

Quantitative Methods · Quantitative Biology 2024-04-01 Michał Szafarczyk , Piotr Ludynia , Przemysław Kukla

Large Language Models (LLMs) have demonstrated remarkable versatility in recent years, offering potential applications across specialized domains such as healthcare and medicine. Despite the availability of various open-source LLMs tailored…

Computation and Language · Computer Science 2024-07-18 Yanis Labrak , Adrien Bazoge , Emmanuel Morin , Pierre-Antoine Gourraud , Mickael Rouvier , Richard Dufour

Linear models are a core component for statistical software that analyzes treatment effects. They are used in experimentation platforms where analysis is automated, as well as scientific studies where analysis is done locally and manually.…

Computation · Statistics 2019-10-15 Jeffrey Wong , Randall Lewis , Matthew Wardrop

Large language models (LLMs) have demonstrated remarkable potential across numerous applications and have shown an emergent ability to tackle complex reasoning tasks, such as mathematical computations. However, even for the simplest…

Computation and Language · Computer Science 2024-09-04 Wei Zhang , Chaoqun Wan , Yonggang Zhang , Yiu-ming Cheung , Xinmei Tian , Xu Shen , Jieping Ye

Efficient branching policies are essential for accelerating Mixed Integer Linear Programming (MILP) solvers. Their design has long relied on hand-crafted heuristics, and now machine learning has emerged as a promising paradigm to automate…

Artificial Intelligence · Computer Science 2026-05-12 Zhinan Hou , Xingchen Li , Yankai Zhang , Tianxun Li , Keyou You

Extracting quantitative phenotypic information from whole-slide images presents significant challenges for investigators who are not experienced in developing image analysis algorithms. We present new software that enables rapid…

Recent breakthroughs in large Language Models (LLMs) have enabled various generative tasks on a single model. Real-world services (e.g., OpenAI's ChatGPT [27]) powered by an LLM often concurrently support latency-critical requests for…

Artificial Intelligence · Computer Science 2025-04-15 Wan Borui , Zhao Juntao , Jiang Chenyu , Guo Chuanxiong , Wu Chuan

liquidSVM is a package written in C++ that provides SVM-type solvers for various classification and regression tasks. Because of a fully integrated hyper-parameter selection, very carefully implemented solvers, multi-threading and GPU…

Machine Learning · Statistics 2017-02-23 Ingo Steinwart , Philipp Thomann

Despite the rapid development of large language models (LLMs), a fundamental challenge persists: the lack of high-quality optimization modeling datasets hampers LLMs' robust modeling of practical optimization problems from natural language…

Artificial Intelligence · Computer Science 2025-02-24 Hongliang Lu , Zhonglin Xie , Yaoyu Wu , Can Ren , Yuxuan Chen , Zaiwen Wen