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Deep Learning and big data have shown tremendous success in bioinformatics and computational biology in recent years; artificial intelligence methods have also significantly contributed in the task of protein function classification. This…

Biomolecules · Quantitative Biology 2022-11-18 Divyanshu Aggarwal , Yasha Hasija

With a growing demand for accurate ion beam analysis on a large number of samples, it becomes an issue of how to ensure the quality standards and consistency over hundreds or thousands of samples. In this sense, a virtual assistant that…

Computational analysis methods including machine learning have a significant impact in the fields of genomics and medicine. High-throughput gene expression analysis methods such as microarray technology and RNA sequencing produce enormous…

Genomics · Quantitative Biology 2022-09-28 Nikita Bhandari , Rahee Walambe , Ketan Kotecha , Satyajeet Khare

Today, data is growing at a tremendous rate and, according to the International Data Corporation, it is expected to reach 175 zettabytes by 2025. The International Data Corporation also forecasts that more than 150B devices will be…

Databases · Computer Science 2021-07-09 Valentina Janev

DNA-mediated computing is a novel technology that seeks to capitalize on the enormous informational capacity of DNA and has tremendous computational ability to compete with the current silicon-mediated computing, due to massive parallelism…

Emerging Technologies · Computer Science 2017-09-01 Jian-Jun Shu , Qi-Wen Wang , Kian-Yan Yong

DNA methylation is a well-studied genetic modification crucial to regulate the functioning of the genome. Its alterations play an important role in tumorigenesis and tumor-suppression. Thus, studying DNA methylation data may help biomarker…

Genomics · Quantitative Biology 2018-04-16 Fabrizio Celli , Fabio Cumbo , Emanuel Weitschek

The integration of Generative Artificial Intelligence (GenAI) within the Internet of Things (IoT) is garnering considerable interest. This growing attention stems from the continuous evolution and widespread adoption they are both having…

Artificial Intelligence · Computer Science 2025-04-11 Fabrizio Mangione , Claudio Savaglio , Giancarlo Fortino

Nowadays, the amount of heterogeneous biomedical data is increasing more and more thanks to novel sensing techniques and high-throughput technologies. In reference to biomedical image analysis, the advances in image acquisition modalities…

Image and Video Processing · Electrical Eng. & Systems 2021-06-09 Leonardo Rundo

Deep learning is an advanced technology that relies on large-scale data and complex models for feature extraction and pattern recognition. It has been widely applied across various fields, including computer vision, natural language…

Genomics · Quantitative Biology 2024-12-24 Yindan Luo , Jiaxin Cai

The Internet of things (IoT) is a rapidly advancing area of technology that has quickly become more widespread in recent years. With greater numbers of everyday objects being connected to the Internet, many different innovations have been…

Networking and Internet Architecture · Computer Science 2022-02-08 Zachary Menter , Wei Tee , Rushit Dave

Achieving complete reproducibility in science, particularly in research fields such as biodiversity, is challenging due to analytical choices, bias and interpretation. Here, we examine examples of reproducibility in biological systematics,…

Other Quantitative Biology · Quantitative Biology 2025-08-01 Charles Morphy D. Santos , Luciana Campos Paulino , Michaella P. Andrade , Gabriel Tognella-Poccia , João Paulo Gois

Deep neural networks, particularly Transformers, have been widely adopted for predicting the functional properties of proteins. In this work, we focus on exploring whether Protein Transformers can capture biological intelligence among…

Machine Learning · Computer Science 2025-06-10 Fudong Lin , Wanrou Du , Jinchan Liu , Tarikul Milon , Shelby Meche , Wu Xu , Xiaoqi Qin , Xu Yuan

In biological research machine learning algorithms are part of nearly every analytical process. They are used to identify new insights into biological phenomena, interpret data, provide molecular diagnosis for diseases and develop…

Recent technological advancements in data acquisition tools allowed life scientists to acquire multimodal data from different biological application domains. Broadly categorized in three types (i.e., sequences, images, and signals), these…

Quantitative Methods · Quantitative Biology 2020-03-03 Mufti Mahmud , M Shamim Kaiser , Amir Hussain

Current metagenomic analysis algorithms require significant computing resources, can report excessive false positives (type I errors), may miss organisms (type II errors / false negatives), or scale poorly on large datasets. This paper…

Databases · Computer Science 2015-01-23 Ashley Mae Conard , Stephanie Dodson , Jeremy Kepner , Darrell Ricke

Identifying individual animals is crucial for many biological investigations. In response to some of the limitations of current identification methods, new automated computer vision approaches have emerged with strong performance. Here, we…

Computer Vision and Pattern Recognition · Computer Science 2021-12-22 Maxime Vidal , Nathan Wolf , Beth Rosenberg , Bradley P. Harris , Alexander Mathis

Manual observation and monitoring of individual cows for disease detection present significant challenges in large-scale farming operations, as the process is labor-intensive, time-consuming, and prone to reduced accuracy. The reliance on…

Machine Learning · Computer Science 2026-01-09 Rupsa Rani Mishra , D. Chandrasekhar Rao , Ajaya Kumar Tripathy

Internet of Things (IoT) sensors are ubiquitous technologies deployed across smart cities, industrial sites, and healthcare systems. They continuously generate time series data that enable advanced analytics and automation in industries.…

Machine Learning · Computer Science 2025-09-24 Muhammad Sakib Khan Inan , Kewen Liao

Data is evolving with the rapid progress of population and communication for various types of devices such as networks, cloud computing, Internet of Things (IoT), actuators, and sensors. The increment of data and communication content goes…

Machine Learning · Computer Science 2021-02-05 Swarajya Lakshmi V Papineni , Snigdha Yarlagadda , Harita Akkineni , A. Mallikarjuna Reddy

Internet-of-Things (IoT) devices are known to be the source of many security problems, and as such, they would greatly benefit from automated management. This requires robustly identifying devices so that appropriate network security…

Cryptography and Security · Computer Science 2021-07-19 Roman Kolcun , Diana Andreea Popescu , Vadim Safronov , Poonam Yadav , Anna Maria Mandalari , Richard Mortier , Hamed Haddadi