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The rapid deployment of Internet of Things (IoT) applications leads to massive data that need to be processed. These IoT applications have specific communication requirements on latency and bandwidth, and present new features on their…

Networking and Internet Architecture · Computer Science 2021-04-27 Di Wu , Xiaofeng Xie , Xiang Ni , Bin Fu , Hanhui Deng , Haibo Zeng , Zhijin Qin

Microarray is one of the essential technologies used by the biologist to measure genome-wide expression levels of genes in a particular organism under some particular conditions or stimuli. As microarrays technologies have become more…

Artificial Intelligence · Computer Science 2020-05-05 Khalid Raza

Generative artificial intelligence (GenAI) has become a transformative approach in bioinformatics that often enables advancements in genomics, proteomics, transcriptomics, structural biology, and drug discovery. To systematically identify…

Internet of Things (IoT) has become a popular paradigm to fulfil needs of the industry such as asset tracking, resource monitoring and automation. As security mechanisms are often neglected during the deployment of IoT devices, they are…

Cryptography and Security · Computer Science 2022-11-21 Martin Kodys , Zhi Lu , Kar Wai Fok , Vrizlynn L. L. Thing

Recently, deep neural networks have been outperforming conventional machine learning algorithms in many computer vision-related tasks. However, it is not computationally acceptable to implement these models on mobile and IoT devices and the…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-24 Behnam Zeinali , Di Zhuang , J. Morris Chang

Advancements in clinical Brain-Computer Interfaces (BCIs) depend on precise and reliable signal interpretation. However, the high-dimensional and noisy nature of data captured from both implanted and non-implanted BCIs poses significant…

Neurons and Cognition · Quantitative Biology 2026-05-20 Elena C Offenberg , Dirk Keller , Mariska J Vansteensel , Zachary V Freudenburg , Nick F Ramsey , Julia Berezutskaya

Deep learning-based AI models have been extensively applied in genomics, achieving remarkable success across diverse applications. As these models gain prominence, there exists an urgent need for interpretability methods to establish…

Genomics · Quantitative Biology 2025-05-16 Chenyu Wang , Chaoying Zuo , Zihan Su , Yuhang Xing , Lu Li , Maojun Wang , Zeyu Zhang

Hand-sized Deoxyribonucleic acid (DNA) sequencing machines are of growing importance in several life sciences fields as their small footprints enable a broader range of use cases than their larger, stationary counterparts. However, as…

Hardware Architecture · Computer Science 2025-10-13 Abel Beyene , Zhongpan Wu , Yunus Dawji , Karim Hammad , Ebrahim Ghafar-Zadeh , Sebastian Magierowski

Advances in bioinformatics are primarily due to new algorithms for processing diverse biological data sources. While sophisticated alignment algorithms have been pivotal in analyzing biological sequences, deep learning has substantially…

Miniature DNA sequencing hardware has begun to succeed in mobile contexts, driving demand for efficient machine learning at the edge. This domain leverages deep learning techniques familiar from speech and time-series analysis for both…

Hardware Architecture · Computer Science 2025-10-13 Sebastian Magierowski , Zhongpan Wu , Abel Beyene , Karim Hammad

Genetic information is increasing exponentially, doubling every 18 months. Analyzing this information within a reasonable amount of time requires parallel computing resources. While considerable research has addressed DNA analysis using…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-06-30 Suejb Memeti , Sabri Pllana

Large Language Models (LLMs) are revolutionizing bioinformatics, enabling advanced analysis of DNA, RNA, proteins, and single-cell data. This survey provides a systematic review of recent advancements, focusing on genomic sequence modeling,…

Computation and Language · Computer Science 2026-03-03 Zhenyu Wang , Zikang Wang , Jiyue Jiang , Pengan Chen , Xiangyu Shi , Yu Li

Artificial Intelligence (AI) technology is based on theory and development of computer systems able to perform tasks that normally require human intelligence. In this context, deep learning is a family of computational methods that allow an…

Computers and Society · Computer Science 2019-05-17 Mario Coccia

Implementing large-scale deep neural networks with high computational complexity on low-cost IoT devices may inevitably be constrained by limited computation resource, making the devices hard to respond in real-time. This disjunction makes…

Machine Learning · Computer Science 2018-05-25 Yi Yang , Andy Chen , Xiaoming Chen , Jiang Ji , Zhenyang Chen , Yan Dai

This paper surveys foundation models for AI-enabled biological design, focusing on recent developments in applying large-scale, self-supervised models to tasks such as protein engineering, small molecule design, and genomic sequence design.…

Artificial Intelligence · Computer Science 2025-05-20 Asher Moldwin , Amarda Shehu

Artificial intelligence (AI) systems utilizing deep neural networks (DNNs) and machine learning (ML) algorithms are widely used for solving important problems in bioinformatics, biomedical informatics, and precision medicine. However,…

Quantitative Methods · Quantitative Biology 2023-02-24 Md. Rezaul Karim , Tanhim Islam , Oya Beyan , Christoph Lange , Michael Cochez , Dietrich Rebholz-Schuhmann , Stefan Decker

Nowadays, data is becoming the new fuel for economic wealth and creation of novel and profitable business models. Multitude of technologies are contributing to an abundance of information sources which are already the baseline for…

Databases · Computer Science 2024-03-07 Laura Martín , Luis Sánchez , Jorge Lanza , Pablo Sotres

Internet of Things (IoT) has brought along immense benefits to our daily lives encompassing a diverse range of application domains that we regularly interact with, ranging from healthcare automation to transport and smart environments.…

Cryptography and Security · Computer Science 2020-07-21 Mengmeng Ge , Naeem Firdous Syed , Xiping Fu , Zubair Baig , Antonio Robles-Kelly

Artificial intelligence has provided us with an exploration of a whole new research era. As more data and better computational power become available, the approach is being implemented in various fields. The demand for it in health…

Machine Learning · Computer Science 2020-08-11 Gloria Hyunjung Kwak , Pan Hui

Artificial Intelligence (AI) provides many opportunities to improve private and public life. Discovering patterns and structures in large troves of data in an automated manner is a core component of data science, and currently drives…

Artificial Intelligence · Computer Science 2019-10-11 Vaishak Belle