Related papers: Metamorphic Testing for Quality Assurance of Prote…

Large language models and deep learning models designed for code intelligence have revolutionized the software engineering field due to their ability to perform various code-related tasks. These models can process source code and software…

Genetic programming is an evolutionary approach known for its performance in program synthesis. However, it is not yet mature enough for a practical use in real-world software development, since usually many training cases are required to…

In recent years, advances in artificial intelligence (AI) have transformed structural biology, particularly protein structure prediction. Though AI-based methods, such as AlphaFold (AF), often predict single conformations of proteins with…

With the wide application of machine translation, the testing of Machine Translation Systems (MTSs) has attracted much attention. Recent works apply Metamorphic Testing (MT) to address the oracle problem in MTS testing. Existing MT methods…

Motivation: Protein function prediction is a challenging task and an open problem in computational biology. The Critical Assessment of protein Function Annotation (CAFA) is a triennial, community-driven initiative that provides an…

Metamorphic testing is a testing method for problems without test oracles. Integration testing allows for detecting errors in complex systems that may not be found during the testing of their components. In this paper, we propose a novel…

A test oracle determines whether a system behaves correctly for a given input. Automatic testing techniques rely on an automated test oracle to test the system without user interaction. Important families of automated test oracles include…

With the rapid growth of the applications of machine learning (ML) and other artificial intelligence (AI) techniques, adequate testing has become a necessity to ensure their quality. This paper identifies the characteristics of AI…

AlphaFold 3 (AF3), the latest version of protein structure prediction software, goes beyond its predecessors by predicting protein-protein complexes. It could revolutionize drug discovery and protein engineering, marking a major step…

Checking software application suitability using automated software tools has become a vital element for most organisations irrespective of whether they produce in-house software or simply customise off-the-shelf software applications for…

Metamorphic testing (MT) has proven to be a successful solution to automating testing and addressing the oracle problem. However, it entails manually deriving metamorphic relations (MRs) and converting them into an executable form; these…

Augmented generation techniques such as Retrieval-Augmented Generation (RAG) and Cache-Augmented Generation (CAG) have revolutionized the field by enhancing large language model (LLM) outputs with external knowledge and cached information.…

Autoformalization addresses the scarcity of data for Automated Theorem Proving (ATP) by translating mathematical problems from natural language into formal statements. Efforts in recent work shift from directly prompting large language…

Background: The increasing volume and variety of genotypic and phenotypic data is a major defining characteristic of modern biomedical sciences. At the same time, the limitations in technology for generating data and the inherently…

In medical image synthesis, the precision of localized structural details is crucial, particularly when addressing specific clinical requirements such as the identification and measurement of fine structures. Traditional methods for image…

As the laws have become more complicated and enormous, the role of software systems in navigating and understanding these intricacies has become more critical. Given their socio-economic and legally critical implications, ensuring software…

Post-translational modifications (PTMs) have key roles in extending the functional diversity of proteins and as a result, regulating diverse cellular processes in prokaryotic and eukaryotic organisms. Phosphorylation modification is a vital…

Post-translational modifications (PTMs) have vital roles in extending the functional diversity of proteins and as a result, regulating diverse cellular processes in prokaryotic and eukaryotic organisms. Phosphorylation modification is a…

Short product lifecycles and a high variety of products force industrial manufacturing processes to change frequently. Due to the manual approach of many quality analysis techniques, they can significantly slow down adaption processes of…

Functional peptides have the potential to treat a variety of diseases. Their good therapeutic efficacy and low toxicity make them ideal therapeutic agents. Artificial intelligence-based computational strategies can help quickly identify new…