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We apply topological data analysis to the behavior of C. elegans, a widely-studied model organism in biology. In particular, we use topology to produce a quantitative summary of complex behavior which may be applied to high-throughput data.…

Algebraic Topology · Mathematics 2021-07-23 Ashleigh Thomas , Kathleen Bates , Alex Elchesen , Iryna Hartsock , Hang Lu , Peter Bubenik

We study the persistent homology of both functional data on compact topological spaces and structural data presented as compact metric measure spaces. One of our goals is to define persistent homology so as to capture primarily properties…

Algebraic Topology · Mathematics 2018-11-27 Haibin Hang , Facundo Mémoli , Washington Mio

Graph pattern matching is often defined in terms of subgraph isomorphism, an NP-complete problem. To lower its complexity, various extensions of graph simulation have been considered instead. These extensions allow pattern matching to be…

Databases · Computer Science 2012-01-04 Shuai Ma , Yang Cao , Wenfei Fan , Jinpeng Huai , Tianyu Wo

Topological event detection allows for the distributed computation of homology by focusing on local changes occurring in a network over time. In this paper, a model for the monitoring of topological events in dynamically changing regions…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-01-15 Vincent Knapps , Karl-Heinz Zimmermann

Persistent homology is a method for computing the topological features present in a given data. Recently, there has been much interest in the integration of persistent homology as a computational step in neural networks or deep learning. In…

Machine Learning · Computer Science 2020-11-17 Padraig Corcoran , Bailin Deng

The study of phase transitions using data-driven approaches is challenging, especially when little prior knowledge of the system is available. Topological data analysis is an emerging framework for characterizing the shape of data and has…

Statistical Mechanics · Physics 2021-05-26 Quoc Hoan Tran , Mark Chen , Yoshihiko Hasegawa

The global topology of spacetime, though invisible to local curvature measurements, leaves signatures on the correlation functions of quantum fields. We study these signatures using an Unruh-DeWitt particle detector operating in…

General Relativity and Quantum Cosmology · Physics 2026-04-24 Nirmalya Kajuri , Sheeshram Siddh

An emerging way of tackling the dimensionality issues arising in the modeling of a multivariate process is to assume that the inherent data structure can be captured by a graph. Nevertheless, though state-of-the-art graph-based methods have…

Machine Learning · Statistics 2016-07-13 Andreas Loukas , Nathanael Perraudin

Object recognition in unseen indoor environments remains a challenging problem for visual perception of mobile robots. In this letter, we propose the use of topologically persistent features, which rely on the objects' shape information, to…

Computer Vision and Pattern Recognition · Computer Science 2021-07-30 Ekta U. Samani , Xingjian Yang , Ashis G. Banerjee

Community detection for time series without prior knowledge poses an open challenge within complex networks theory. Traditional approaches begin by assessing time series correlations and maximizing modularity under diverse null models.…

Social and Information Networks · Computer Science 2023-11-13 Marco Gregnanin , Johannes De Smedt , Giorgio Gnecco , Maurizio Parton

Topological correctness plays a critical role in many image segmentation tasks, yet most networks are trained using pixel-wise loss functions, such as Dice, neglecting topological accuracy. Existing topology-aware methods often lack robust…

Computer Vision and Pattern Recognition · Computer Science 2025-04-21 Laurin Lux , Alexander H. Berger , Alexander Weers , Nico Stucki , Daniel Rueckert , Ulrich Bauer , Johannes C. Paetzold

Topological data analysis uses tools from topology -- the mathematical area that studies shapes -- to create representations of data. In particular, in persistent homology, one studies one-parameter families of spaces associated with data,…

Machine Learning · Computer Science 2020-12-01 Guido Montúfar , Nina Otter , Yuguang Wang

Path signatures are powerful nonparametric tools for time series analysis, shown to form a universal and characteristic feature map for Euclidean valued time series data. We lift the theory of path signatures to the setting of Lie group…

Computer Vision and Pattern Recognition · Computer Science 2020-07-16 Darrick Lee , Robert Ghrist

Geometric features, robust to noise, of curves in Euclidean space are of great interest for various applications such as machine learning and image analysis. We apply the Fels-Olver's moving frame method (for geometric features) paired with…

Differential Geometry · Mathematics 2022-06-09 Joscha Diehl , Rosa Preiß , Michael Ruddy , Nikolas Tapia

Persistent homology probes topological properties from point clouds and functions. By looking at multiple scales simultaneously, one can record the births and deaths of topological features as the scale varies. In this paper we use a…

The signature of a path is an essential object in the theory of rough paths. The signature representation of the data stream can recover standard statistics, e.g. the moments of the data stream. The classification of random walks indicates…

Other Statistics · Statistics 2015-09-14 Hao Ni

Over the years, hand gesture recognition has been mostly addressed considering hand trajectories in isolation. However, in most sign languages, hand gestures are defined on a particular context (body region). We propose a pipeline to…

Computer Vision and Pattern Recognition · Computer Science 2016-07-22 Marc Martínez-Camarena , Jose Oramas , Mario Montagud-Climent , Tinne Tuytelaars

Detecting statistical interactions between input features is a crucial and challenging task. Recent advances demonstrate that it is possible to extract learned interactions from trained neural networks. It has also been observed that, in…

Machine Learning · Computer Science 2020-11-05 Zirui Liu , Qingquan Song , Kaixiong Zhou , Ting Hsiang Wang , Ying Shan , Xia Hu

Gait event detection of the initial contact and toe off is essential for running gait analysis, allowing the derivation of parameters such as stance time. Heuristic-based methods exist to estimate these key gait events from tibial…

Machine Learning · Computer Science 2020-12-15 Pieter Robberechts , Rud Derie , Pieter Van den Berghe , Joeri Gerlo , Dirk De Clercq , Veerle Segers , Jesse Davis

We define topological time crystals, a dynamical phase of periodically driven quantum many-body systems capturing the coexistence of intrinsic topological order with the spontaneous breaking of discrete time-translation symmetry. We show…

Disordered Systems and Neural Networks · Physics 2024-11-15 Thorsten B. Wahl , Bo Han , Benjamin Béri
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