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Graph-structured data and their related algorithms have attracted significant attention in many fields, such as influenza prediction in public health. However, the variable influenza seasonality, occasional pandemics, and domain knowledge…

Artificial Intelligence · Computer Science 2021-02-17 Jie Zhang , Pengfei Zhou , Hongyan Wu

As the COVID-19 ravaging through the globe, accurate forecasts of the disease spread is crucial for situational awareness, resource allocation, and public health decision-making. Alternative to the traditional disease surveillance data…

Applications · Statistics 2021-11-04 Simin Ma , Shihao Yang

The COVID-19 pandemic has brought forth the importance of epidemic forecasting for decision makers in multiple domains, ranging from public health to the economy as a whole. While forecasting epidemic progression is frequently…

Machine Learning · Computer Science 2022-07-21 Alexander Rodríguez , Harshavardhan Kamarthi , Pulak Agarwal , Javen Ho , Mira Patel , Suchet Sapre , B. Aditya Prakash

Despite having triggered devastating pandemics in the past, our ability to quantitatively assess the emergence potential of individual strains of animal influenza viruses remains limited. This study introduces Emergenet, a tool to infer a…

Populations and Evolution · Quantitative Biology 2024-11-27 Kevin Yuanbo Wu , Jin Li , Aaron Esser-Kahn , Ishanu Chattopadhyay

Evidence-based knowledge of infectious disease burden, including prevalence, incidence, severity and transmission, in different population strata and locations, and possibly in real time, is crucial to the planning and evaluation of public…

Methodology · Statistics 2018-08-14 Daniela De Angelis , Anne M. Presanis

The estimation from available data of parameters governing epidemics is a major challenge. In addition to usual issues (data often incomplete and noisy), epidemics of the same nature may be observed in several places or over different…

Methodology · Statistics 2021-09-20 Romain Narci , Maud Delattre , Catherine Larédo , Elisabeta Vergu

In this work, we aim to determine the main factors driving behavioral change during the seasonal flu. To this end, we analyze a unique dataset comprised of 599 surveys completed by 434 Italian users of Influweb, a Web platform for…

Physics and Society · Physics 2020-07-01 Nicolò Gozzi , Daniela Perrotta , Daniela Paolotti , Nicola Perra

Online searches have been used to study different health-related behaviours, including monitoring disease outbreaks. An obvious caveat is that several reasons can motivate individuals to seek online information and models that are blind to…

Machine Learning · Computer Science 2021-01-19 Sara Mesquita , Cláudio Haupt Vieira , Lília Perfeito , Joana Gonçalves-Sá

Influenza viruses mutate rapidly and can pose a threat to public health, especially to those in vulnerable groups. Throughout history, influenza A viruses have caused pandemics between different species. It is important to identify the…

Machine Learning · Computer Science 2024-05-24 Yanhua Xu , Dominik Wojtczak

Forecasting influenza like illnesses (ILI) has rapidly progressed in recent years from an art to a science with a plethora of data-driven methods. While these methods have achieved qualified success, their applicability is limited due to…

Machine Learning · Computer Science 2021-01-26 Alexander Rodríguez , Bijaya Adhikari , Naren Ramakrishnan , B. Aditya Prakash

The Influenza type A virus can be considered as one of the most severe viruses that can infect multiple species with often fatal consequences to the hosts. The Haemagglutinin (HA) gene of the virus has the potential to be a target for…

Quantitative Methods · Quantitative Biology 2021-02-16 Charalambos Chrysostomou , Harris Partaourides , Huseyin Seker

Background: Micro-blogging services such as Twitter offer the potential to crowdsource epidemics in real-time. However, Twitter posts ('tweets') are often ambiguous and reactive to media trends. In order to ground user messages in epidemic…

Computation and Language · Computer Science 2011-10-17 Nigel Collier , Nguyen Truong Son , Ngoc Mai Nguyen

The attack of novel avian influenza (H7N9) in east China caused a serious health crisis and public panic. In this paper, we empirically analyze the onset patterns of human cases of the novel avian influenza and observe several spatial and…

Physics and Society · Physics 2014-03-05 Ya-Nan Pan , Jing-Jing Lou , Xiao-Pu Han

Epidemic surveillance is a challenging task, especially when crucial data is fragmented across institutions and data custodians are unable or unwilling to share it. This study aims to explore the feasibility of a simple federated…

Applications · Statistics 2024-09-17 Ruiqi Lyu , Roni Rosenfeld , Bryan Wilder

The accurate estimation of time-varying transmission rates is fundamental for understanding infectious disease dynamics and implementing effective public health interventions. To this end, we propose an improved inverse method for…

Populations and Evolution · Quantitative Biology 2025-12-17 Shuanglin Jing , Yuting Huang , Hai-Feng Huo

In today's world,the risk of emerging and re-emerging epidemics have increased.The recent advancement in healthcare technology has made it possible to predict an epidemic outbreak in a region.Early prediction of an epidemic outbreak greatly…

Machine Learning · Computer Science 2024-09-01 Akshara Pramod , JS Abhishek , Suganthi K

We perform an analytical sensitivity analysis for a model of a continuous-time branching process evolving on a fixed network. This allows us to determine the relative importance of the model parameters to the growth of the population on the…

Physics and Society · Physics 2015-09-08 Sophie Hautphenne , Gautier Krings , Jean-Charles Delvenne , Vincent D. Blondel

Absenteeism of elementary school children has been shown to be effective in the early detection of an incoming influenza epidemic within a given population. This paper introduces DESA, an R package designed to: 1) model an epidemic using…

Applications · Statistics 2026-03-11 Vinay Joshy , Zeny Feng , Lorna Deeth , Kayla Vanderkruk , Justin Slater

We present a study of the worldwide spread of a pandemic influenza and its possible containment at a global level taking into account all available information on air travel. We studied a metapopulation stochastic epidemic model on a global…

Other Quantitative Biology · Quantitative Biology 2007-05-23 Vittoria Colizza , Alain Barrat , Marc Barthelemy , Alain-Jacques Valleron , Alessandro Vespignani

The epidemiology has recently witnessed great advances based on computational models. Its scope and impact are getting wider thanks to the new data sources feeding analytical frameworks and models. Besides traditional variables considered…

Computers and Society · Computer Science 2023-11-13 David Pastor-Escuredo
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