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Fluid-structure interactions between active and passive components are important for many biological systems to function. A particular example is chromatin in the cell nucleus, where ATP-powered processes drive coherent motions of the…

Soft Condensed Matter · Physics 2024-02-15 Scott Weady , David B. Stein , Alexandra Zidovska , Michael J. Shelley

A general framework for performing event-driven simulations of systems with semi-flexible or rigid bodies interacting under impulsive torques and forces is outlined. Two different approaches are presented. In the first, the dynamics and…

Statistical Mechanics · Physics 2007-05-23 Lisandro Hernandez de la Pena , Ramses van Zon , Jeremy Schofield , Sheldon B. Opps

The motion of flexible fibers through structured fluidic environments is ubiquitous in nature and industrial applications. Most often, their dynamics results from the complex interplay between internal elastic stresses, contact forces and…

Fluid Dynamics · Physics 2022-09-23 Ursy Makanga , Mohammadreza Sepahi , Camille Duprat , Blaise Delmotte

The present work proposes an approach for fluid-solid and contact interaction problems including thermo-mechanical coupling and reversible phase transitions. The solid field is assumed to consist of several arbitrarily-shaped, undeformable…

Computational Engineering, Finance, and Science · Computer Science 2021-09-14 Sebastian L. Fuchs , Christoph Meier , Wolfgang A. Wall , Christian J. Cyron

Flexible filaments moving in viscous fluids are ubiquitous in the natural microscopic world. For example, the swimming of bacteria and spermatozoa as well as important physiological functions at organ-level, such as the cilia-induced motion…

Soft Condensed Matter · Physics 2019-06-05 Panayiota Katsamba , Eric Lauga

Active filament-like systems propelling along their backbone exist across the scales ranging from motor-driven bio-filaments to worms and robotic chains. In macroscopic active filaments such as chain of robots, in contrast to their…

Soft Condensed Matter · Physics 2023-10-04 Mohammad Fazelzadeh , Ehsan Irani , Zahra Mokhtari , Sara Jabbari-Farouji

Scroll waves are three-dimensional excitation patterns that rotate around a central filament curve; they occur in many physical, biological and chemical systems. We explicitly derive the equations of motion for scroll wave filaments in…

Soft Condensed Matter · Physics 2014-08-20 Hans Dierckx , Henri Verschelde

A recent large deflection cantilever model is considered. The principal nonlinear effects come through the beam's inextensibility---local arc length preservation---rather than traditional extensible effects attributed to fully restricted…

Analysis of PDEs · Mathematics 2019-10-16 Maria Deliyianni , Varun Gudibanda , Jason Howell , Justin T. Webster

For the first time, the development of the nonlinear geometrically exact governing equations and corresponding boundary conditions of hanging cantilevered flexible pipes conveying fluid in the framework of the quaternion system is…

Fluid Dynamics · Physics 2024-06-13 Amir Mehdi Dehrouyeh-Semnani

We study the over-damped dynamics of individual one-dimensional elastic filaments subjected to a chiral active force which propels each point of the filament at a fixed angle relative to the tangent vector of the filament at that point.…

Soft Condensed Matter · Physics 2026-03-09 Chanania Steinbock , Daniel A. Beller

Computational fluid dynamics is both a thriving research field and a key tool for advanced industry applications. The central challenge is to simulate turbulent flows in complex geometries, a compute-power intensive task due to the large…

We have developed an efficient simulation algorithm for strongly interacting relativistic fermions in two-dimensional field theories based on a formulation as a loop gas. The loop models describing the dynamics of the fermions can be mapped…

High Energy Physics - Lattice · Physics 2009-11-05 Urs Wenger

A new simulation method for solving fluid-structure coupling problems has been developed. All the basic equations are numerically solved on a fixed Cartesian grid using a finite difference scheme. A volume-of-fluid formulation (Hirt and…

Computational Physics · Physics 2015-05-20 Kazuyasu Sugiyama , Satoshi Ii , Shintaro Takeuchi , Shu Takagi , Yoichiro Matsumoto

A new and very general technique for simulating solid-fluid suspensions is described; its most important feature is that the computational cost scales linearly with the number of particles. The method combines Newtonian dynamics of the…

comp-gas · Physics 2009-10-22 Anthony J. C. Ladd

We develop a numerical a framework to study phoretic particle dynamics in two dimensions. The particles are modeled as chemically active rigid circles, which can emit or absorb a solute into surrounding fluid. The interaction between…

Soft Condensed Matter · Physics 2025-12-16 Zhe Gou , Alexander Farutin , Chaouqi Misbah

A novel approach is presented for computing flexible body dynamics based on conventional structural dynamics models. This approach innovatively captures the rigid body motion component embedded within a flexible body's movement, generates…

Numerical Analysis · Mathematics 2025-10-29 Xiaobo Liu

We present a novel method to investigate the dynamics of a single semiflexible polymer, subject to anisotropic friction in a viscous fluid. In contrast to previous approaches, we do not rely on a discrete bead-rod model, but introduce a…

Biomolecules · Quantitative Biology 2009-11-13 Tobias Munk , Oskar Hallatschek , Chris H. Wiggins , Erwin Frey

In recent years, soft robotics simulators have evolved to offer various functionalities, including the simulation of different material types (e.g., elastic, hyper-elastic) and actuation methods (e.g., pneumatic, cable-driven, servomotor).…

Robotics · Computer Science 2025-02-03 Etienne Ménager , Louis Montaut , Quentin Le Lidec , Justin Carpentier

In this work, we consider fluid-structure interaction simulation with nonlinear hyperelastic models in the solid part. We use a partitioned approach to deal with the coupled nonlinear fluid-structure interaction problems. We focus on…

Numerical Analysis · Mathematics 2013-12-20 Ulrich Langer , Huidong Yang

A finite element program is presented to simulate the process of packing and coiling elastic wires in two- and three-dimensional confining cavities. The wire is represented by third order beam elements and embedded into a corotational…

Soft Condensed Matter · Physics 2020-07-20 Roman Vetter , Falk K. Wittel , Norbert Stoop , Hans J. Herrmann
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