English

Dynamics of Semiflexible Polymers in a Flow Field

Biomolecules 2009-11-13 v4 Soft Condensed Matter

Abstract

We present a novel method to investigate the dynamics of a single semiflexible polymer, subject to anisotropic friction in a viscous fluid. In contrast to previous approaches, we do not rely on a discrete bead-rod model, but introduce a suitable normal mode decomposition of a continuous space curve. By means of a perturbation expansion for stiff filaments we derive a closed set of coupled Langevin equations in mode space for the nonlinear dynamics in two dimensions, taking into account exactly the local constraint of inextensibility. The stochastic differential equations obtained this way are solved numerically, with parameters adjusted to describe the motion of actin filaments. As an example, we show results for the tumbling motion in shear flow.

Keywords

Cite

@article{arxiv.q-bio/0604032,
  title  = {Dynamics of Semiflexible Polymers in a Flow Field},
  author = {Tobias Munk and Oskar Hallatschek and Chris H. Wiggins and Erwin Frey},
  journal= {arXiv preprint arXiv:q-bio/0604032},
  year   = {2009}
}

Comments

Corrected Label in Fig. 2. 12 pages, 10 figures