Related papers: Relation extraction between the clinical entities …
Medication Extraction and Mining play an important role in healthcare NLP research due to its practical applications in hospital settings, such as their mapping into standard clinical knowledge bases (SNOMED-CT, BNF, etc.). In this work, we…
Recent advances in natural language processing (NLP), particularly with the emergence of large language models (LLMs), have significantly enhanced the field of textual analysis. However, while these developments have yielded substantial…
Annotation corpus for discourse relations benefits NLP tasks such as machine translation and question answering. In this paper, we present SciDTB, a domain-specific discourse treebank annotated on scientific articles. Different from…
Relation extraction has been widely studied to extract new relational facts from open corpus. Previous relation extraction methods are faced with the problem of wrong labels and noisy data, which substantially decrease the performance of…
Joint extraction of entities and relations is an important task in information extraction. To tackle this problem, we firstly propose a novel tagging scheme that can convert the joint extraction task to a tagging problem. Then, based on our…
We consider the task of KBP slot filling -- extracting relation information from newswire documents for knowledge base construction. We present our pipeline, which employs Relational Dependency Networks (RDNs) to learn linguistic patterns…
Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…
Sequence labeling is a widely used method for named entity recognition and information extraction from unstructured natural language data. In clinical domain one major application of sequence labeling involves extraction of medical entities…
Document-level relation extraction (RE) aims to extract the relations between entities from the input document that usually containing many difficultly-predicted entity pairs whose relations can only be predicted through relational…
Automatic extraction of clinical concepts is an essential step for turning the unstructured data within a clinical note into structured and actionable information. In this work, we propose a clinical concept extraction model for automatic…
FDA drug labels are rich sources of information about drugs and drug-disease relations, but their complexity makes them challenging texts to analyze in isolation. To overcome this, we situate these labels in two health knowledge graphs: one…
Ontology can be used for the interpretation of natural language. To construct an anti-infective drug ontology, one needs to design and deploy a methodological step to carry out the entity discovery and linking. Medical synonym resources…
Joint medical relation extraction refers to extracting triples, composed of entities and relations, from the medical text with a single model. One of the solutions is to convert this task into a sequential tagging task. However, in the…
Relation classification is an important semantic processing task in the field of natural language processing (NLP). In this paper, we present a novel model, Structure Regularized Bidirectional Recurrent Convolutional Neural…
Named entity recognition is one of the core tasks in NLP. Although many improvements have been made on this task during the last years, the state-of-the-art systems do not explicitly take into account the recursive nature of language.…
End-to-end relation extraction aims to identify named entities and extract relations between them. Most recent work models these two subtasks jointly, either by casting them in one structured prediction framework, or performing multi-task…
Relation Extraction (RE) is a fundamental task of information extraction, which has attracted a large amount of research attention. Previous studies focus on extracting the relations within a sentence or document, while currently…
Entities, as the essential elements in relation extraction tasks, exhibit certain structure. In this work, we formulate such structure as distinctive dependencies between mention pairs. We then propose SSAN, which incorporates these…
We propose a knowledge-based approach for extraction of Cause-Effect (CE) relations from biomedical text. Our approach is a combination of an unsupervised machine learning technique to discover causal triggers and a set of high-precision…
In the context of requirements engineering, relation extraction involves identifying and documenting the associations between different requirements artefacts. When dealing with textual requirements (i.e., requirements expressed using…