Related papers: Reciprocal Best Match Graphs
Rectangular layouts, subdivisions of an outer rectangle into smaller rectangles, have many applications in visualizing spatial information, for instance in rectangular cartograms in which the rectangles represent geographic or political…
The similarity of graph structures, such as Meaning Representations (MRs), is often assessed via structural matching algorithms, such as Smatch (Cai and Knight, 2013). However, Smatch involves a combinatorial problem that suffers from…
We show that the cophylogenetic distance, k-interval cospeciation, is distinct from other metrics and accounts for global congruence between locally incongruent trees. The growth of the neighborhood of trees which satisfy the largest…
The statistical shape analysis called Procrustes analysis minimizes the distance between matrices by similarity transformations. The method returns a set of optimal orthogonal matrices, which project each matrix into a common space. This…
The rank of a graph is defined to be the rank of its adjacency matrix. A graph is called reduced if it has no isolated vertices and no two vertices with the same set of neighbors. A reduced graph $G$ is said to be maximal if any reduced…
Distance-based approaches in phylogenetics such as Neighbor-Joining are a fast and popular approach for building trees. These methods take pairs of sequences from them construct a value that, in expectation, is additive under a stochastic…
An important problem in geometric computing is defining and computing similarity between two geometric shapes, e.g. point sets, curves and surfaces, etc. Important geometric and topological information of many shapes can be captured by…
In this paper, the extremal graph with the maximum RRD-value among all the graphs of order n with given cut vertices or edges is characterized. In addition, an upper bounds on the reciprocal degree distance in terms of the number of cut…
Grammatical relationships (GRs) form an important level of natural language processing, but different sets of GRs are useful for different purposes. Therefore, one may often only have time to obtain a small training corpus with the desired…
B$_0$-VPG graphs are intersection graphs of vertical and horizontal line segments on a plane. Cohen, Golumbic, Trotter, and Wang [Order, 2016] pose the question of characterizing B$_0$-VPG permutation graphs. We respond here by…
Finding correspondences between shapes is a fundamental problem in computer vision and graphics, which is relevant for many applications, including 3D reconstruction, object tracking, and style transfer. The vast majority of correspondence…
For arbitrary semimetric space $(X, d)$ and disjoint proximinal subsets $A$, $B$ of $X$ we define the proximinal graph as a bipartite graph with parts $A$ and $B$ whose edges $\{a, b\}$ satisfy the equality $d(a, b) = \operatorname{dist}(A,…
Temporal graphs are graphs whose topology is subject to discrete changes over time. Given a static underlying graph $G$, a temporal graph is represented by assigning a set of integer time-labels to every edge $e$ of $G$, indicating the…
In order to conduct a statistical analysis on a given set of phylogenetic gene trees, we often use a distance measure between two trees. In a statistical distance-based method to analyze discordance between gene trees, it is a key to decide…
We consider the problem of morphing between contact representations of a plane graph. In an $\mathcal F$-contact representation of a plane graph $G$, vertices are realized by internally disjoint elements from a family $\mathcal F$ of…
Let B be a finite collection of geometric (not necessarily convex) bodies in the plane. Clearly, this class of geometric objects naturally generalizes the class of disks, lines, ellipsoids, and even convex polygons. We consider geometric…
Graph Neural Networks (GNNs) have been widely used for the representation learning of various structured graph data. While promising, most existing GNNs oversimplified the complexity and diversity of the edges in the graph, and thus…
A coloring of a tree is convex if the vertices that pertain to any color induce a connected subtree; a partial coloring (which assigns colors to some of the vertices) is convex if it can be completed to a convex (total) coloring. Convex…
The history of gene families -- which are equivalent to event-labeled gene trees -- can to some extent be reconstructed from empirically estimated evolutionary event-relations containing pairs of orthologous, paralogous or xenologous genes.…
In a 2018 paper, Cameron and Semeraro posed the problem of finding all group-graph reciprocal pairs. In this paper, we make a significant contribution to finding all such pairs. A group and graph form a reciprocal pair if they satisfy the…