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In multi-resolution simulations, different system components are simultaneously modelled at different levels of resolution, these being smoothly coupled together. In the case of enzyme systems, computationally expensive atomistic detail is…

Biological Physics · Physics 2016-11-03 Aoife C. Fogarty , Raffaello Potestio , Kurt Kremer

Biological mixtures, such as the cellular cytoplasm, are composed of a large number of different components. From this heterogeneity, ordered mesoscopic structures emerge, such as liquid phases with controlled composition. These structures…

Biological Physics · Physics 2024-12-03 Rodrigo Braz Teixeira , Giorgio Carugno , Izaak Neri , Pablo Sartori

Let $ R=k[x_1...x_r]$ and $M$ a multigraded $R-$module. In this work we interpret $M$ as a multipersistent homology module and give a multigraded resolution of it. The construction involves cellular resolutions of monomial ideals and…

Algebraic Topology · Mathematics 2015-12-22 Wojciech Chacholski , Martina Scolamiero , Francesco Vaccarino

The direct correlation function of a fluid mixture of parallel hard cubes is obtained by using Rosenfeld's fundamental measure approximation. This approximation is thermodynamically consistent (compressibility and virial equations of state…

Condensed Matter · Physics 2009-10-28 Jose A. Cuesta

Over the past few decades the experimental literature has consistently reported observations of attraction between like-charged colloidal particles and macromolecules in solution. Examples include nucleic acids and colloidal particles in…

Soft Condensed Matter · Physics 2020-04-22 Alzbeta Kubincova , Philippe H. Hunenberger , Madhavi Krishnan

In adaptive resolution simulations, molecular fluids are modeled employing different levels of resolution in different subregions of the system. When traveling from one region to the other, particles change their resolution on the fly. One…

Statistical Mechanics · Physics 2015-10-28 Karsten Kreis , Aoife C. Fogarty , Kurt Kremer , Raffaello Potestio

It is shown that almost all known solutions of the kind mentioned in the title are easily derived in a unified manner when a simple ansatz is imposed on the metric. The Whittaker solution is an exception, replaced by a new solution with the…

General Relativity and Quantum Cosmology · Physics 2007-05-23 B. V. Ivanov

A variety of models for the membrane-mediated interaction of particles in lipid membranes, mostly well-established in theoretical physics, is reviewed from a mathematical perspective. We provide mathematically consistent formulations in a…

Analysis of PDEs · Mathematics 2016-06-29 Charles M. Elliott , Carsten Gräser , Graham Hobbs , Ralf Kornhuber , Maren-Wanda Wolf

Integral equation theory of molecular liquids based on statistical mechanics is quite promising as an essential part of multiscale methodology for chemical and biomolecular nanosystems in solution. Beginning with a molecular interaction…

Soft Condensed Matter · Physics 2015-10-23 A. Kovalenko

The morphometric approach is a powerful ansatz for decomposing the chemical potential for a complex solute into purely geometrical terms. This method has proven accuracy in hard spheres, presenting an alternative to comparatively expensive…

Statistical Mechanics · Physics 2019-10-28 Joshua F. Robinson , Roland Roth , C. Patrick Royall

We introduce a new abstraction for the representation and solution of multi-domain problems using finite element methods. This is an advance over previous work in that it achieves a single higher-level abstraction that represents…

Mathematical Software · Computer Science 2025-12-09 Koki Sagiyama , Lawrence Mitchell , David A. Ham

The mixing problem is classically encountered in the study of differential equations applied to fluid dynamics. An understanding of fluid movement under constraints is particularly important in the field of medicine as many therapeutics and…

Medical Physics · Physics 2024-02-05 Neil Zhao

We view a complex liquid as a network of bonds connecting each particle to its nearest neighbors; the dynamics of this network is a chain of discrete events signaling particles rearrangements. Within this picture, we studied a…

Disordered Systems and Neural Networks · Physics 2012-05-11 Alexander Z. Patashinski , Rafal Orlik , Antoni C. Mitus , Mark A. Ratner , Bartosz A. Grzybowski

Several methods in nonadiabatic molecular dynamics are based on Madelung's hydrodynamic description of nuclear motion, while the electronic component is treated as a finite-dimensional quantum system. In this context, the quantum potential…

Mathematical Physics · Physics 2024-06-04 François Gay-Balmaz , Cesare Tronci

A model of two-component relativistic fluid is considered, and the thermal nature of coupling between the fluid constituents is outlined. This thermal coupling is responsible for non-ideality of the fluid composite where the components are…

Nuclear Theory · Physics 2011-08-16 Ernst Trojan , George V. Vlasov

We present exact, analytic and simple solutions of relativistic perfect fluid hydrodynamics. The solutions allow us to calculate the rapidity distribution of the particles produced at the freeze-out, and fit them to the measured rapidity…

Nuclear Theory · Physics 2008-11-26 M. Csanad , M. I. Nagy , T. Csorgo

When addressing spatial biological questions using mathematical models, symmetries within the system are often exploited to simplify the problem by reducing its physical dimension. In a reduced-dimension model molecular movement is…

Quantitative Methods · Quantitative Biology 2025-02-17 Natasha S. Savage

A numerical method is presented to obtain approximate solutions to problems arising from sedimentation models. These processes are widely utilized in minery for recovering water from suspensions coming out of flotation processes. The main…

Numerical Analysis · Mathematics 2008-06-23 Ricardo Ruiz Baier

With respect to earlier investigations, the theory of multi-component, concentric, copolar, axisymmetric, rigidly rotating polytropes is improved and extended, including subsystems with nonzero density on the boundary and subsystems with…

Astrophysics of Galaxies · Physics 2016-07-21 R. Caimmi

The soliton resolution conjecture is one of the most interesting open problems in the theory of nonlinear dispersive equations. Roughly speaking it asserts that a solution with generic initial condition converges to a finite number of…

Mathematical Physics · Physics 2015-09-02 Claudio Bonanno