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Randomising networks using a naive `accept-all' edge-swap algorithm is generally biased. Building on recent results for nondirected graphs, we construct an ergodic detailed balance Markov chain with non-trivial acceptance probabilities for…

Quantitative Methods · Quantitative Biology 2011-12-21 E. S. Roberts , A. C. C. Coolen

In this paper, we aim to develop a unified view of causal and non-causal feature selection methods. The unified view will fill in the gap in the research of the relation between the two types of methods. Based on the Bayesian network…

Artificial Intelligence · Computer Science 2018-12-18 Kui Yu , Lin Liu , Jiuyong Li

Undirected graphical models, or Markov networks, are a popular class of statistical models, used in a wide variety of applications. Popular instances of this class include Gaussian graphical models and Ising models. In many settings,…

Statistics Theory · Mathematics 2015-09-08 Eunho Yang , Pradeep Ravikumar , Genevera I. Allen , Zhandong Liu

Graphical model learning and inference are often performed using Bayesian techniques. In particular, learning is usually performed in two separate steps. First, the graph structure is learned from the data; then the parameters of the model…

Statistics Theory · Mathematics 2013-09-09 Marco Scutari

Identifiability of discrete statistical models with latent variables is known to be challenging to study, yet crucial to a model's interpretability and reliability. This work presents a general algebraic technique to investigate…

Statistics Theory · Mathematics 2024-03-20 Yuqi Gu

This paper provides a graphical characterization of Markov blankets in chain graphs (CGs) under the Lauritzen-Wermuth-Frydenberg (LWF) interpretation. The characterization is different from the well-known one for Bayesian networks and…

Machine Learning · Computer Science 2020-06-02 Mohammad Ali Javidian , Marco Valtorta , Pooyan Jamshidi

We cast episodic Markov decision process (MDP) planning as Bayesian inference over policies. A policy is treated as the latent variable and is assigned an unnormalized probability of optimality that is monotone in its expected return,…

Machine Learning · Computer Science 2026-04-14 David Tolpin

"Mixed Data" comprising a large number of heterogeneous variables (e.g. count, binary, continuous, skewed continuous, among other data types) are prevalent in varied areas such as genomics and proteomics, imaging genetics, national…

Statistics Theory · Mathematics 2014-11-04 Eunho Yang , Pradeep Ravikumar , Genevera I. Allen , Yulia Baker , Ying-Wooi Wan , Zhandong Liu

A branching process in a Markovian environment consists of an irreducible Markov chain on a set of "environments" together with an offspring distribution for each environment. At each time step the chain transitions to a new random…

Probability · Mathematics 2021-06-22 Lila Greco , Lionel Levine

We derive an implicit description of the image of a semialgebraic set under a birational map, provided that the denominators of the map are positive on the set. For statistical models which are globally rationally identifiable, this yields…

Statistics Theory · Mathematics 2024-10-31 Tobias Boege , Liam Solus

AThe paper gives a few arguments in favour of the use of chain graphs for description of probabilistic conditional independence structures. Every Bayesian network model can be equivalently introduced by means of a factorization formula with…

Artificial Intelligence · Computer Science 2013-02-01 Milan Studeny

In large-scale genomic applications vast numbers of molecular features are scanned in order to find a small number of candidates which are linked to a particular disease or phenotype. This is a variable selection problem in the "large p,…

Computation · Statistics 2014-02-13 Manuela Zucknick , Sylvia Richardson

We study Markov bases of decomposable graphical models consisting of primitive moves (i.e., square-free moves of degree two) by determining the structure of fibers of sample size two. We show that the number of elements of fibers of sample…

Statistics Theory · Mathematics 2010-03-04 Hisayuki Hara , Satoshi Aoki , Akimichi Takemura

Symmetric independence relations are often studied using graphical representations. Ancestral graphs or acyclic directed mixed graphs with $m$-separation provide classes of symmetric graphical independence models that are closed under…

Statistics Theory · Mathematics 2020-09-14 Søren Wengel Mogensen , Niels Richard Hansen

Real-world complex systems are often modelled by sets of equations with endogenous and exogenous variables. What can we say about the causal and probabilistic aspects of variables that appear in these equations without explicitly solving…

Artificial Intelligence · Computer Science 2021-11-25 Tineke Blom , Mirthe M. van Diepen , Joris M. Mooij

The algorithmic Markov condition states that the most likely causal direction between two random variables X and Y can be identified as that direction with the lowest Kolmogorov complexity. Due to the halting problem, however, this notion…

Machine Learning · Computer Science 2017-02-23 Kailash Budhathoki , Jilles Vreeken

We consider Markov decision processes (MDPs) in which the transition probabilities and rewards belong to an uncertainty set parametrized by a collection of random variables. The probability distributions for these random parameters are…

Logic in Computer Science · Computer Science 2020-02-26 Murat Cubuktepe , Nils Jansen , Sebastian Junges , Joost-Pieter Katoen , Ufuk Topcu

The complexity of a reasoning task over a graphical model is tied to the induced width of the underlying graph. It is well-known that the conditioning (assigning values) on a subset of variables yields a subproblem of the reduced complexity…

Data Structures and Algorithms · Computer Science 2012-07-19 Bozhena Bidyuk , Rina Dechter

We propose generalizations of a number of standard network models, including the classic random graph, the configuration model, and the stochastic block model, to the case of time-varying networks. We assume that the presence and absence of…

Social and Information Networks · Computer Science 2018-05-02 Xiao Zhang , Cristopher Moore , M. E. J. Newman

Full Bayesian computational inference for model determination in undirected graphical models is currently restricted to decomposable graphs, except for problems of very small scale. In this paper we develop new, more efficient methodology…

Computation · Statistics 2012-06-05 Peter J. Green , Alun Thomas
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