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The Eclipse Layout Kernel (ELK) is a collection of graph drawing algorithms that supports compound graph layout and ports as explicit anchor points of edges. It is available as open-source library under an EPL license. Since its beginning,…

Data Structures and Algorithms · Computer Science 2023-11-02 Sören Domrös , Reinhard von Hanxleden , Miro Spönemann , Ulf Rüegg , Christoph Daniel Schulze

Helix is an open-source, extensible, Python-based software framework to facilitate reproducible and interpretable machine learning workflows for tabular data. It addresses the growing need for transparent experimental data analytics…

OutlierDetection.jl is an open-source ecosystem for outlier detection in Julia. It provides a range of high-performance outlier detection algorithms implemented directly in Julia. In contrast to previous packages, our ecosystem enables the…

Machine Learning · Computer Science 2022-11-10 David Muhr , Michael Affenzeller , Anthony D. Blaom

Engine for Likelihood-Free Inference (ELFI) is a Python software library for performing likelihood-free inference (LFI). ELFI provides a convenient syntax for arranging components in LFI, such as priors, simulators, summaries or distances,…

Motivation: In this paper we present the latest release of EBIC, a next-generation biclustering algorithm for mining genetic data. The major contribution of this paper is adding support for big data, making it possible to efficiently run…

Genomics · Quantitative Biology 2024-09-05 Patryk Orzechowski , Jason H. Moore

Most of the problems in genetic algorithms are very complex and demand a large amount of resources that current technology can not offer. Our purpose was to develop a Java-JINI distributed library that implements Genetic Algorithms with…

Neural and Evolutionary Computing · Computer Science 2016-05-24 Marco AR Erra , Pedro MM Mitra , Agostinho C Rosa

The R-package REPPlab is designed to explore multivariate data sets using one-dimensional unsupervised projection pursuit. It is useful in practice as a preprocessing step to find clusters or as an outlier detection tool for multivariate…

Computation · Statistics 2024-09-10 Daniel Fischer , Alain Berro , Klaus Nordhausen , Anne Ruiz-Gazen

Automated kernel design is critical for overcoming software ecosystem barriers in emerging hardware platforms like RISC-V. While large language models (LLMs) have shown promise for automated kernel optimization, demonstrating success in…

Software Engineering · Computer Science 2025-09-19 Siyuan Chen , Zhichao Lu , Qingfu Zhang

MIML library is a Java software tool to develop, test, and compare classification algorithms for multi-instance multi-label (MIML) learning. The library includes 43 algorithms and provides a specific format and facilities for data managing…

Machine Learning · Computer Science 2024-02-14 Álvaro Belmonte , Amelia Zafra , Eva Gibaja

Biclustering is a data mining technique which searches for local patterns in numeric tabular data with main application in bioinformatics. This technique has shown promise in multiple areas, including development of biomarkers for cancer,…

Machine Learning · Computer Science 2021-05-05 Paweł Renc , Patryk Orzechowski , Aleksander Byrski , Jarosław Wąs , Jason H. Moore

We present an open-source and extensible knowledge extraction toolkit DeepKE, supporting complicated low-resource, document-level and multimodal scenarios in the knowledge base population. DeepKE implements various information extraction…

In this paper, we consider advancing web-scale knowledge extraction and alignment by integrating OpenIE extractions in the form of (subject, predicate, object) triples with Knowledge Bases (KB). Traditional techniques from universal schema…

Information Retrieval · Computer Science 2019-04-30 Dongxu Zhang , Subhabrata Mukherjee , Colin Lockard , Xin Luna Dong , Andrew McCallum

MLJ (Machine Learing in Julia) is an open source software package providing a common interface for interacting with machine learning models written in Julia and other languages. It provides tools and meta-algorithms for selecting, tuning,…

Machine Learning · Computer Science 2020-12-01 Anthony D. Blaom , Franz Kiraly , Thibaut Lienart , Yiannis Simillides , Diego Arenas , Sebastian J. Vollmer

The application of Machine Learning (ML) in Electronic Design Automation (EDA) for Very Large-Scale Integration (VLSI) design has garnered significant research attention. Despite the requirement for extensive datasets to build effective ML…

Machine Learning · Computer Science 2025-07-08 Jingyu Pan , Chen-Chia Chang , Zhiyao Xie , Yiran Chen , Hai Li

LensKit is an open-source toolkit for building, researching, and learning about recommender systems. First released in 2010 as a Java framework, it has supported diverse published research, small-scale production deployments, and education…

Information Retrieval · Computer Science 2020-09-04 Michael D. Ekstrand

Large Language Models (LLMs) have rapidly advanced, with Gemini-3-Pro setting a new performance milestone. In this work, we explore collective intelligence as an alternative to monolithic scaling, and demonstrate that open-source LLMs'…

Artificial Intelligence · Computer Science 2026-02-12 Shengji Tang , Weihao Lin , Peng Ye , Jingqi Ye , Hao Li , Yiqun Zhang , Xiaosong Wang , Bo Zhang , Shuyue Hu , Tao Chen , Lei Bai , Wanli Ouyang

Apache Spark is a popular open-source platform for large-scale data processing that is well-suited for iterative machine learning tasks. In this paper we present MLlib, Spark's open-source distributed machine learning library. MLlib…

We introduce NetworKit, an open-source software package for analyzing the structure of large complex networks. Appropriate algorithmic solutions are required to handle increasingly common large graph data sets containing up to billions of…

Social and Information Networks · Computer Science 2015-11-16 Christian L. Staudt , Aleksejs Sazonovs , Henning Meyerhenke

The abundance of massive network data in a plethora of applications makes scalable analysis algorithms and software tools necessary to generate knowledge from such data in reasonable time. Addressing scalability as well as other…

Social and Information Networks · Computer Science 2022-09-28 Eugenio Angriman , Alexander van der Grinten , Michael Hamann , Henning Meyerhenke , Manuel Penschuck

Open-domain question answering (OpenQA) represents a cornerstone in natural language processing (NLP), primarily focused on extracting answers from unstructured textual data. With the rapid advancements in Large Language Models (LLMs),…

Computation and Language · Computer Science 2025-10-28 Tingjia Shen , Hao Wang , Chuan Qin , Ruijun Sun , Yang Song , Defu Lian , Hengshu Zhu , Enhong Chen
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